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The map label for this gene is rpl4lp [H]

Identifier: 45359107

GI number: 45359107

Start: 1499911

End: 1500669

Strand: Direct

Name: rpl4lp [H]

Synonym: MMP1544

Alternate gene names: 45359107

Gene position: 1499911-1500669 (Clockwise)

Preceding gene: 45359106

Following gene: 45359108

Centisome position: 90.29

GC content: 37.15

Gene sequence:

>759_bases
ATGAATGTTAAAGTTTACAATTTAGATGGTTCTGAAAAGGGAGATATTGAATTACCCGCTGTATTTGAAGCAGAATACAG
GCCTGATTTAATTAAAAGGGCAGTAATCTCATCATTAACCGCAAAATTACAACCAAAAGGTTGCGATGCATTTGCAGGAT
ACAGAACTTCAGCAAAATCAATCGGAAAAGGACACGGTAAAGCTAGAGTTAGAAGAACCGCACAAGGTGCTGGTGCATTC
GTACCCCAAGCAGTTGGTGGAAGAAGAGCTCACCCTCCTAAAGTTGAAAAAATCTTATTCGAAAGAATAAACAGAAAAGA
AAAATTAAAAGCATTAGCAAGTGCTATTGCAGCTTCAGCAAACCCTGAAATCGTTTCAGCAAGAGGCCACAAAATTGAAG
GTGTTCCTTCATTACCTTTGGTTGTTAACGCAGAATTTGAGAGCCTTGTTAAAACAAAAGAAGTTTTAGAAGTTTTCAAA
ACTTTAAAATTAGATGCTGACTTAGAAAGAGCTAAAGACGGCGTTAAAATTAGAGCAGGAAGGGGAAAATTAAGAGGAAG
AAAATACATAAAACCAAAAAGTGTTTTGGTTGTTGTAGGCGATGCATGTGAAGCAATTACTGCATCAAGAAACCTCGCAG
GTGTAGATGTAATTACAGCTAACGATTTAAGCGCAATACACATTGCACCAGGAACAATGGCTGGAAGATTAACACTCTGG
ACTGAAAATGCCATTGAAAAAATAAACGGAAGATTTTAA

Upstream 100 bases:

>100_bases
AGCTGCTGAAGACAAATTCGGCTTACCTGAAATTGCTTACATCAGTACAGAATCCAAACAAGGAAACTAATTACTCAAAA
ACACGAGCAGGTGTTAAATT

Downstream 100 bases:

>100_bases
GCTCAATACGAGGTGAATGGCATGGATGCCTTTGATGTTATAAAAACACCAATCGTTAGTGAAAAAACAATGAAACTCAT
TGAAGAAGAAAACAGATTGG

Product: 50S ribosomal protein L4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MNVKVYNLDGSEKGDIELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGAGAF
VPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFK
TLKLDADLERAKDGVKIRAGRGKLRGRKYIKPKSVLVVVGDACEAITASRNLAGVDVITANDLSAIHIAPGTMAGRLTLW
TENAIEKINGRF

Sequences:

>Translated_252_residues
MNVKVYNLDGSEKGDIELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGAGAF
VPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFK
TLKLDADLERAKDGVKIRAGRGKLRGRKYIKPKSVLVVVGDACEAITASRNLAGVDVITANDLSAIHIAPGTMAGRLTLW
TENAIEKINGRF
>Mature_252_residues
MNVKVYNLDGSEKGDIELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGAGAF
VPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFK
TLKLDADLERAKDGVKIRAGRGKLRGRKYIKPKSVLVVVGDACEAITASRNLAGVDVITANDLSAIHIAPGTMAGRLTLW
TENAIEKINGRF

Specific function: Forms part of the polypeptide exit tunnel [H]

COG id: COG0088

COG function: function code J; Ribosomal protein L4

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L4P family [H]

Homologues:

Organism=Homo sapiens, GI16579885, Length=254, Percent_Identity=35.8267716535433, Blast_Score=134, Evalue=5e-32,
Organism=Caenorhabditis elegans, GI17508669, Length=245, Percent_Identity=36.734693877551, Blast_Score=145, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6320215, Length=255, Percent_Identity=36.4705882352941, Blast_Score=132, Evalue=6e-32,
Organism=Saccharomyces cerevisiae, GI6319505, Length=255, Percent_Identity=36.4705882352941, Blast_Score=132, Evalue=6e-32,
Organism=Drosophila melanogaster, GI24650747, Length=245, Percent_Identity=36.3265306122449, Blast_Score=138, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002136
- InterPro:   IPR013000
- InterPro:   IPR019970 [H]

Pfam domain/function: PF00573 Ribosomal_L4 [H]

EC number: NA

Molecular weight: Translated: 27127; Mature: 27127

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS00939 RIBOSOMAL_L1E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVKVYNLDGSEKGDIELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKS
CCEEEEECCCCCCCCEECCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHH
IGKGHGKARVRRTAQGAGAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASA
HHCCCCHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCC
NPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDADLERAKDGVKIRAG
CCCEEECCCCEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEC
RGKLRGRKYIKPKSVLVVVGDACEAITASRNLAGVDVITANDLSAIHIAPGTMAGRLTLW
CCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCEEEEE
TENAIEKINGRF
EHHHHHHHCCCC
>Mature Secondary Structure
MNVKVYNLDGSEKGDIELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKS
CCEEEEECCCCCCCCEECCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHH
IGKGHGKARVRRTAQGAGAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASA
HHCCCCHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCC
NPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDADLERAKDGVKIRAG
CCCEEECCCCEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEC
RGKLRGRKYIKPKSVLVVVGDACEAITASRNLAGVDVITANDLSAIHIAPGTMAGRLTLW
CCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCEEEEE
TENAIEKINGRF
EHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA