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The map label for this gene is ycdM [C]

Identifier: 41410007

GI number: 41410007

Start: 4372642

End: 4373517

Strand: Reverse

Name: ycdM [C]

Synonym: MAP3909c

Alternate gene names: 41410007

Gene position: 4373517-4372642 (Counterclockwise)

Preceding gene: 41410008

Following gene: 41410001

Centisome position: 90.55

GC content: 66.55

Gene sequence:

>876_bases
ATGGAATTGGGATTGCATTTCATCGACTTTCTGCCCGGCGACCCGGCACGGCTGGGCCCGACGCTGACCGAGGCGGCCCG
CGCCGCCGAGCAGGGCGGTGCCACGCTGTTGACCCTGGCCGACCACTTCTTCCAGATGGAACAGCTTGGGCCCGCGGAGA
ATCCGTTCCTCGAGGGCTACACGTCGCTGGGTTTTCTGGCCGCGCAGACCTCCACGATCGAGCTGGCGCTGCTGGTCACC
GGGGTCACCTATCGCTACCCCGGCGTGTTGGCCAAGACGGTCACCACCCTGGACGTGTTGTCGCAGGGCCGGTCGATGCT
GGGACTCGGGGCGGCCTGGTACGAACGCGAGCACACCGCGTTGGGCATTCCGTATCCCGCGCTGAGCACACGGTTCGAGA
TGCTCGAGGAAACCCTGCAGATCTGCCGGCAGATGTGGAGCGACGACGACGGCGCGTACCAGGGCAAGCACTACCGGCTG
GCCGAGACGATCTGTGCGCCACAGCCGATTCGGCGCCCGCCGATCCTGATCGGTGGGGACGGCGAGAAGAAGACGCTGCG
TTTGGTCGCGCAGTACGCCGACGTCTGGAACAGCATGTCGAACGACCTCGCCGAGCTCGAGCACAAGATCGAGGTGCTGC
ACCGGCACTGCGACGCGGTGGGCCGCGACCCGCGGGATATCCGTAAGACGTGCGGTGGCCTGGCGACCCTCGACCCGTTC
GAGAACCTCGACGAATACCTCAGGACGGCGGAACGCTTCGGCCGGCTCGGCATCGACATGATCAACGTGGGGCCGCTGCC
CGGCAATCCGGATCCCGTCGGCTATATCCGCCGGCTGGGCGATGAGGTGATCCCCCGGCTGGCCGAAATCGGTTGA

Upstream 100 bases:

>100_bases
GCCATCCAGGAGCGCTACACGGAGGCGGAGCGGCGCGTCATCGTCGACGCGCTGTCGCTGCTCGAGCGCTTGACCGAGCA
ATAGCAGAGAGGGACCCACC

Downstream 100 bases:

>100_bases
TGGCGTTCGGCTTTCGCTATCCCGGATACCGGGAGTAGCAGGCGTCCGCGTTGCCGGTCACGCCGCCGCGGAACGCCGCG
ATGCGGGTGAAACCCGCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MELGLHFIDFLPGDPARLGPTLTEAARAAEQGGATLLTLADHFFQMEQLGPAENPFLEGYTSLGFLAAQTSTIELALLVT
GVTYRYPGVLAKTVTTLDVLSQGRSMLGLGAAWYEREHTALGIPYPALSTRFEMLEETLQICRQMWSDDDGAYQGKHYRL
AETICAPQPIRRPPILIGGDGEKKTLRLVAQYADVWNSMSNDLAELEHKIEVLHRHCDAVGRDPRDIRKTCGGLATLDPF
ENLDEYLRTAERFGRLGIDMINVGPLPGNPDPVGYIRRLGDEVIPRLAEIG

Sequences:

>Translated_291_residues
MELGLHFIDFLPGDPARLGPTLTEAARAAEQGGATLLTLADHFFQMEQLGPAENPFLEGYTSLGFLAAQTSTIELALLVT
GVTYRYPGVLAKTVTTLDVLSQGRSMLGLGAAWYEREHTALGIPYPALSTRFEMLEETLQICRQMWSDDDGAYQGKHYRL
AETICAPQPIRRPPILIGGDGEKKTLRLVAQYADVWNSMSNDLAELEHKIEVLHRHCDAVGRDPRDIRKTCGGLATLDPF
ENLDEYLRTAERFGRLGIDMINVGPLPGNPDPVGYIRRLGDEVIPRLAEIG
>Mature_291_residues
MELGLHFIDFLPGDPARLGPTLTEAARAAEQGGATLLTLADHFFQMEQLGPAENPFLEGYTSLGFLAAQTSTIELALLVT
GVTYRYPGVLAKTVTTLDVLSQGRSMLGLGAAWYEREHTALGIPYPALSTRFEMLEETLQICRQMWSDDDGAYQGKHYRL
AETICAPQPIRRPPILIGGDGEKKTLRLVAQYADVWNSMSNDLAELEHKIEVLHRHCDAVGRDPRDIRKTCGGLATLDPF
ENLDEYLRTAERFGRLGIDMINVGPLPGNPDPVGYIRRLGDEVIPRLAEIG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=141, Percent_Identity=27.6595744680851, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 32118; Mature: 32118

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELGLHFIDFLPGDPARLGPTLTEAARAAEQGGATLLTLADHFFQMEQLGPAENPFLEGY
CCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCCCCHHHHH
TSLGFLAAQTSTIELALLVTGVTYRYPGVLAKTVTTLDVLSQGRSMLGLGAAWYEREHTA
HHHHHHHCCCCHHEEHHHHHCHHHHCCCHHHHHHHHHHHHHCCCHHHHCCHHHHHCCCCE
LGIPYPALSTRFEMLEETLQICRQMWSDDDGAYQGKHYRLAETICAPQPIRRPPILIGGD
ECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEECCC
GEKKTLRLVAQYADVWNSMSNDLAELEHKIEVLHRHCDAVGRDPRDIRKTCGGLATLDPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHH
ENLDEYLRTAERFGRLGIDMINVGPLPGNPDPVGYIRRLGDEVIPRLAEIG
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELGLHFIDFLPGDPARLGPTLTEAARAAEQGGATLLTLADHFFQMEQLGPAENPFLEGY
CCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCCCCHHHHH
TSLGFLAAQTSTIELALLVTGVTYRYPGVLAKTVTTLDVLSQGRSMLGLGAAWYEREHTA
HHHHHHHCCCCHHEEHHHHHCHHHHCCCHHHHHHHHHHHHHCCCHHHHCCHHHHHCCCCE
LGIPYPALSTRFEMLEETLQICRQMWSDDDGAYQGKHYRLAETICAPQPIRRPPILIGGD
ECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEECCC
GEKKTLRLVAQYADVWNSMSNDLAELEHKIEVLHRHCDAVGRDPRDIRKTCGGLATLDPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHH
ENLDEYLRTAERFGRLGIDMINVGPLPGNPDPVGYIRRLGDEVIPRLAEIG
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]