| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409934
Identifier: 41409934
GI number: 41409934
Start: 4290746
End: 4293079
Strand: Reverse
Name: 41409934
Synonym: MAP3836c
Alternate gene names: NA
Gene position: 4293079-4290746 (Counterclockwise)
Preceding gene: 41409935
Following gene: 41409933
Centisome position: 88.89
GC content: 61.65
Gene sequence:
>2334_bases ATGCAGCTAAAGCATCTCACCATCGCCGAGCTGGTTGCCGGGGCTGGCGGTGATCCGTGGGAGGTCAACCGGACCTTGCA GGCCGGCCGCCCGGCCCAGATTGAGCGTTTGGCAGAAGCTTTCCACGGCGCGGGGCGTCACACCGCCGAGTCCGACCATG CATTCGCGCAGGCGCAGCAACGTTTCAATGCCGCCTGGAACCATCAGGACGGCGGCCCCAACCCGATCAATAGCTCAGCG GAAGTGCAGCGGACCGTCAAATCCCTTGGCGCGCAGTCTGAACAGTTGCCCAAGATCGGCGCCGACTTGGAAAACATCGC CGCTGCATTGTCCGAGGCGCAAAAAAGCGGTGCTGCAGAGATCGCCACCTTGGAAGGTCAGCTGGAGCAGCTCGACCACA TGATCGACTTGGCCGAGCAGGATCTGCGGGACCACCCCGACGCGGCGAGCCAGCAAGAGCTGCATGCGATTATCAAAGCT CTCCGAACGGCTGCGGTTAATGACACCAAGGATGCGCTCGGCCAGCTGCATGCCACCCGCGACAGCTATTCGAGTTCCCT TCGCAAAGCGCAGACCAACTTGGCCAACGACGGATACGACCCCACATCGACCTTCGGTGCCGACGCCCATGAAGCCGAAA CGCCCGACCAGGCAAGACAAGACGTCACCGATGCCCTGGCGGGTGACAAGGGGGCCGCTTCCCGCGTCAACGGCGTCCTG AACTCGATCACCCCCGACCAGCTGGCCGGGAAGGTGCCGTTGACCGCCGAGCAGGCTTCGGTGTTGAGCCAACTACAGGC GCAAGAACATGGCATGTCTATGGATGCGCTCAAGACCGCCGAACAGCGTTTGGGCGACGAGAAAGGCGTGATCGGCAATT CGTTGCAGCTGATGAGCAACCCGAATCTCATGTTCCCTCAGACCCCGCTGAGCATTGGCGCGAAGCAGGGAACCGACATG GTCAAAGGCGGGGCCAACCAGTTGCCCACAAGTGTTCAGCAGCTGCTGAATTCACCGCGACCGGACCTTCGCCACCTGAA CCAGCTCGCTGACATCGTCAAAGACGGCAACCACACCTTCCAGGCCAACACCGACTTGGACCGTGGGATGGTCAAGCAGG CATCGACGCTCATGAATAGCCCGTTTTGGCGTGCCGGTGAAGGCGGTCCTGGCGACCTCAACCCCGGCATCGACCCCACG GTTTCCAACGTCTTATCGGCGGCATCACCTGATCACCAAGTGGTGCACGACGCCATGACCACCGGCGACCATGACCGCTT CCTGCAGAACCTCACACACCATTCCTGGCAAGACCACGGCCAGGCGGTGAGCTCGCTGTTTTCTTGGACGGGTGATGCGA CCCAAGGACCCGAAGCAAGCATCGCCGCTCAAACCGCACACGCCTACAGCACCTACATCGGGCACCACCAGCAGGACCTA TTGAACCTTCCCGGCAATCACACCCTCGGACAGGTCAACCCCAATCTCGTACAGGGCATGGCCCACGGTTTGGGGCCTTA CGTCGACAACATCGCCGGTACGACCGGCGGACTGCCAGGATTCGGCGACTCCCTAGACAACGAGGGCGACACTCGATCTG GCGCGCTGCCGGTCGCCAAGGGCGTCTTCTCAGTCCTCAATAGCGACCAAGCCGCCGGCCAATACTTCAACGGTCAAGCC TATGCACATGCCGTGGCTCACGAAGCCGCCTTCGGCAATGAGCCGACTCATTCCGGTTACGACACCCAGCTTTACGACGC CGCGACTCTGAAGGGCCTGGTCGACGTCGGAACTCACAACGCCTATCACGCGAATGAAGTAAACGGATATCACCAACAGT TATCCGAATACGAGTTGAAGAAACAGGCATACGAGGCCGGGCTCACCGGTCTAGGCACCGTGGCCGGGTTACCGCCAGGT GTCGGTACCGTGGCCAACCCCGCACTCAACGTGCTCGGACACGGGCTGGAAAACAGCATCCTCGGGCCGGCTCCCAGCGC ACCAGGCGAGAACCCCATCCAACCGATGGACATCGGCGTCGCAGACCAAGGAATGGCCAATGCGATGCTCGCGGCCGGGC ACAACGTCCAGCTTCCGGACGGGTACGTCGTGTACGACGATCAACACCCGCACGGGCGACTCGCAACACTCGACGAAGCA AGGGCGAAATTCCCCGGGCTTACTGCTAGTCAGTACGACGGCGTGATTGGCCCTGCGCTATCGCACGCAATCGCATTGCC GCCCGAGGAAAAAATGTCTCCGGATGAGTGGATGGCCATCCGCTACGACAATGTCGTCGGCGTTCCGCACGCGGACCAGG GACGCCCGAAGTGA
Upstream 100 bases:
>100_bases ATGCTGTCGGGAGGGGTTGGCGGCGCTCCGGGGCTTACTGCCCTGACCGATGTGCAACGGGAGTGGTTGACCAGTCACCG CGAACTGGTATGGGGATGCG
Downstream 100 bases:
>100_bases CGAATGTGTTACGCAAGTTCGGCGGTATTGCCACCTGCGTGGTATTCGCCGTGATCTCGATAGCTGGATGCCACTCAGGC GCCCACCGTTCTGAGGCGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 777; Mature: 777
Protein sequence:
>777_residues MQLKHLTIAELVAGAGGDPWEVNRTLQAGRPAQIERLAEAFHGAGRHTAESDHAFAQAQQRFNAAWNHQDGGPNPINSSA EVQRTVKSLGAQSEQLPKIGADLENIAAALSEAQKSGAAEIATLEGQLEQLDHMIDLAEQDLRDHPDAASQQELHAIIKA LRTAAVNDTKDALGQLHATRDSYSSSLRKAQTNLANDGYDPTSTFGADAHEAETPDQARQDVTDALAGDKGAASRVNGVL NSITPDQLAGKVPLTAEQASVLSQLQAQEHGMSMDALKTAEQRLGDEKGVIGNSLQLMSNPNLMFPQTPLSIGAKQGTDM VKGGANQLPTSVQQLLNSPRPDLRHLNQLADIVKDGNHTFQANTDLDRGMVKQASTLMNSPFWRAGEGGPGDLNPGIDPT VSNVLSAASPDHQVVHDAMTTGDHDRFLQNLTHHSWQDHGQAVSSLFSWTGDATQGPEASIAAQTAHAYSTYIGHHQQDL LNLPGNHTLGQVNPNLVQGMAHGLGPYVDNIAGTTGGLPGFGDSLDNEGDTRSGALPVAKGVFSVLNSDQAAGQYFNGQA YAHAVAHEAAFGNEPTHSGYDTQLYDAATLKGLVDVGTHNAYHANEVNGYHQQLSEYELKKQAYEAGLTGLGTVAGLPPG VGTVANPALNVLGHGLENSILGPAPSAPGENPIQPMDIGVADQGMANAMLAAGHNVQLPDGYVVYDDQHPHGRLATLDEA RAKFPGLTASQYDGVIGPALSHAIALPPEEKMSPDEWMAIRYDNVVGVPHADQGRPK
Sequences:
>Translated_777_residues MQLKHLTIAELVAGAGGDPWEVNRTLQAGRPAQIERLAEAFHGAGRHTAESDHAFAQAQQRFNAAWNHQDGGPNPINSSA EVQRTVKSLGAQSEQLPKIGADLENIAAALSEAQKSGAAEIATLEGQLEQLDHMIDLAEQDLRDHPDAASQQELHAIIKA LRTAAVNDTKDALGQLHATRDSYSSSLRKAQTNLANDGYDPTSTFGADAHEAETPDQARQDVTDALAGDKGAASRVNGVL NSITPDQLAGKVPLTAEQASVLSQLQAQEHGMSMDALKTAEQRLGDEKGVIGNSLQLMSNPNLMFPQTPLSIGAKQGTDM VKGGANQLPTSVQQLLNSPRPDLRHLNQLADIVKDGNHTFQANTDLDRGMVKQASTLMNSPFWRAGEGGPGDLNPGIDPT VSNVLSAASPDHQVVHDAMTTGDHDRFLQNLTHHSWQDHGQAVSSLFSWTGDATQGPEASIAAQTAHAYSTYIGHHQQDL LNLPGNHTLGQVNPNLVQGMAHGLGPYVDNIAGTTGGLPGFGDSLDNEGDTRSGALPVAKGVFSVLNSDQAAGQYFNGQA YAHAVAHEAAFGNEPTHSGYDTQLYDAATLKGLVDVGTHNAYHANEVNGYHQQLSEYELKKQAYEAGLTGLGTVAGLPPG VGTVANPALNVLGHGLENSILGPAPSAPGENPIQPMDIGVADQGMANAMLAAGHNVQLPDGYVVYDDQHPHGRLATLDEA RAKFPGLTASQYDGVIGPALSHAIALPPEEKMSPDEWMAIRYDNVVGVPHADQGRPK >Mature_777_residues MQLKHLTIAELVAGAGGDPWEVNRTLQAGRPAQIERLAEAFHGAGRHTAESDHAFAQAQQRFNAAWNHQDGGPNPINSSA EVQRTVKSLGAQSEQLPKIGADLENIAAALSEAQKSGAAEIATLEGQLEQLDHMIDLAEQDLRDHPDAASQQELHAIIKA LRTAAVNDTKDALGQLHATRDSYSSSLRKAQTNLANDGYDPTSTFGADAHEAETPDQARQDVTDALAGDKGAASRVNGVL NSITPDQLAGKVPLTAEQASVLSQLQAQEHGMSMDALKTAEQRLGDEKGVIGNSLQLMSNPNLMFPQTPLSIGAKQGTDM VKGGANQLPTSVQQLLNSPRPDLRHLNQLADIVKDGNHTFQANTDLDRGMVKQASTLMNSPFWRAGEGGPGDLNPGIDPT VSNVLSAASPDHQVVHDAMTTGDHDRFLQNLTHHSWQDHGQAVSSLFSWTGDATQGPEASIAAQTAHAYSTYIGHHQQDL LNLPGNHTLGQVNPNLVQGMAHGLGPYVDNIAGTTGGLPGFGDSLDNEGDTRSGALPVAKGVFSVLNSDQAAGQYFNGQA YAHAVAHEAAFGNEPTHSGYDTQLYDAATLKGLVDVGTHNAYHANEVNGYHQQLSEYELKKQAYEAGLTGLGTVAGLPPG VGTVANPALNVLGHGLENSILGPAPSAPGENPIQPMDIGVADQGMANAMLAAGHNVQLPDGYVVYDDQHPHGRLATLDEA RAKFPGLTASQYDGVIGPALSHAIALPPEEKMSPDEWMAIRYDNVVGVPHADQGRPK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010427 [H]
Pfam domain/function: PF06259 DUF1023 [H]
EC number: NA
Molecular weight: Translated: 82025; Mature: 82025
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLKHLTIAELVAGAGGDPWEVNRTLQAGRPAQIERLAEAFHGAGRHTAESDHAFAQAQQ CCCCHHHHHHHHHCCCCCCHHCCHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH RFNAAWNHQDGGPNPINSSAEVQRTVKSLGAQSEQLPKIGADLENIAAALSEAQKSGAAE HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCHHCCCHHHHHHHHHHHHHCCCHH IATLEGQLEQLDHMIDLAEQDLRDHPDAASQQELHAIIKALRTAAVNDTKDALGQLHATR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH DSYSSSLRKAQTNLANDGYDPTSTFGADAHEAETPDQARQDVTDALAGDKGAASRVNGVL HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH NSITPDQLAGKVPLTAEQASVLSQLQAQEHGMSMDALKTAEQRLGDEKGVIGNSLQLMSN HCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHCC PNLMFPQTPLSIGAKQGTDMVKGGANQLPTSVQQLLNSPRPDLRHLNQLADIVKDGNHTF CCEECCCCCHHCCCCCCCHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEE QANTDLDRGMVKQASTLMNSPFWRAGEGGPGDLNPGIDPTVSNVLSAASPDHQVVHDAMT EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH TGDHDRFLQNLTHHSWQDHGQAVSSLFSWTGDATQGPEASIAAQTAHAYSTYIGHHQQDL CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHH LNLPGNHTLGQVNPNLVQGMAHGLGPYVDNIAGTTGGLPGFGDSLDNEGDTRSGALPVAK HCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH GVFSVLNSDQAAGQYFNGQAYAHAVAHEAAFGNEPTHSGYDTQLYDAATLKGLVDVGTHN HHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC AYHANEVNGYHQQLSEYELKKQAYEAGLTGLGTVAGLPPGVGTVANPALNVLGHGLENSI CCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHCCHHCCC LGPAPSAPGENPIQPMDIGVADQGMANAMLAAGHNVQLPDGYVVYDDQHPHGRLATLDEA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEHHHHH RAKFPGLTASQYDGVIGPALSHAIALPPEEKMSPDEWMAIRYDNVVGVPHADQGRPK HHHCCCCCHHHCCCCHHHHHHHHCCCCCHHCCCCCCEEEEEECCEECCCCCCCCCCC >Mature Secondary Structure MQLKHLTIAELVAGAGGDPWEVNRTLQAGRPAQIERLAEAFHGAGRHTAESDHAFAQAQQ CCCCHHHHHHHHHCCCCCCHHCCHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH RFNAAWNHQDGGPNPINSSAEVQRTVKSLGAQSEQLPKIGADLENIAAALSEAQKSGAAE HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCHHCCCHHHHHHHHHHHHHCCCHH IATLEGQLEQLDHMIDLAEQDLRDHPDAASQQELHAIIKALRTAAVNDTKDALGQLHATR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH DSYSSSLRKAQTNLANDGYDPTSTFGADAHEAETPDQARQDVTDALAGDKGAASRVNGVL HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH NSITPDQLAGKVPLTAEQASVLSQLQAQEHGMSMDALKTAEQRLGDEKGVIGNSLQLMSN HCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHCC PNLMFPQTPLSIGAKQGTDMVKGGANQLPTSVQQLLNSPRPDLRHLNQLADIVKDGNHTF CCEECCCCCHHCCCCCCCHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEE QANTDLDRGMVKQASTLMNSPFWRAGEGGPGDLNPGIDPTVSNVLSAASPDHQVVHDAMT EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH TGDHDRFLQNLTHHSWQDHGQAVSSLFSWTGDATQGPEASIAAQTAHAYSTYIGHHQQDL CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHH LNLPGNHTLGQVNPNLVQGMAHGLGPYVDNIAGTTGGLPGFGDSLDNEGDTRSGALPVAK HCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH GVFSVLNSDQAAGQYFNGQAYAHAVAHEAAFGNEPTHSGYDTQLYDAATLKGLVDVGTHN HHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC AYHANEVNGYHQQLSEYELKKQAYEAGLTGLGTVAGLPPGVGTVANPALNVLGHGLENSI CCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHCCHHCCC LGPAPSAPGENPIQPMDIGVADQGMANAMLAAGHNVQLPDGYVVYDDQHPHGRLATLDEA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEHHHHH RAKFPGLTASQYDGVIGPALSHAIALPPEEKMSPDEWMAIRYDNVVGVPHADQGRPK HHHCCCCCHHHCCCCHHHHHHHHCCCCCHHCCCCCCEEEEEECCEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]