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The map label for this gene is yciR [C]

Identifier: 41408610

GI number: 41408610

Start: 2820915

End: 2823188

Strand: Direct

Name: yciR [C]

Synonym: MAP2512

Alternate gene names: 41408610

Gene position: 2820915-2823188 (Clockwise)

Preceding gene: 41408609

Following gene: 41408614

Centisome position: 58.41

GC content: 69.61

Gene sequence:

>2274_bases
ATGACGCCGCCCGTCGGCCCCCCCCGGGGTATTCGGGCCGCCCTCGGGATGCTGGCCATCGGGGTGGTCGCCTTCAGCGT
GTCCAGCGTCGCGCATCCGGACGCCGGGCACGGAATCTTCTCGGCGACGGCGCTGTATTCGGCGCTGAACGCCGTCGCCG
CCGGGCTGATCGCGCTGCGCGCCTGCCGGATTCCGGCCGACCGGTGGGCGTGGGCGCTGATCGCCGCCGGCATGGCGTGC
TCGGCGGTGGGCGACGTCGTGTACGCGGTGTGGGTGCCCGACGGGCGCTCACCGTCGGTGGCCGACCCGGAGTATCTGGC
CTACTACCCGTTCGTCTACGCCGGATTGCTGCTGCTGATGCGGGCCCGGCTCAAGCGGCTGCCGATCGCGGTCCAGCTCG
ACTCGGTGGTGTGCGCGTTGACGTTGACCGCGGTGGCCGCGGCGCTGACCGCGGGCCCGCTGCACCAGGCGGCGGTGCAC
GCACCGAAGACGGTGTGGGTGGGGCTGGCCTACCCGTGGTGCGATCTGATGCTGCTGGCCCTGGCCGCCGGCATGCTGCC
GATCTTGGGCTGGCGCAACGAGATTCGCTGGGCGCTGCTGGTGGCGGGGCTGGTTTTGTTCGCGGTCGCCGACGGGGCCT
ACCTGTTCCAGACGGCGGCCGGATCGTATCGGGTCGGTTCCCTGCTGGACGTGTGCTGGCCCGCGTCGTCGGTGCTCATC
GCGATGGCGAGCTGGGCGCCGCCGCCCGCCACGGCGACGCAGGCCCGACGCCGCTTCAGCCCCTATGTCACTCCGGTGGC
GTCCACCATTGTGGCGCTGGGAGTGATTGTGCTGGCCCATCATTCGCGTTCGGCCGCCACCCTGGCGGCGTTGAGCCTGG
TGGTCGGAGCCGGGCGGTTTTCGCTGACCTTCCGCGACGTGAGCCTGCTGCACAGCCACGACCGGCACGCCATGACCGAC
GAGCTGACCGCGCTGCCCAACCGGCGCCAGCTGGTGACGGCCCTGCAGGGTTTGCCCGCCTCGGCATCGCCCGGCGCCGG
TTCGATGCCGAGCCGGGCAAACCCCCGTCGCGCGCTGTTGTTGTTGAGCCTGAGCGACTTTCACGAGATCACCGAATCGA
TCGGCCGGCAATTCGGCGATGAGCTGCTGTGCCACATCGCGAATCGATTGGCCGGCAGCGTCCGTCGCGACGACCTGCTC
GCCCGGGTGGGCGACGACCAGTTCGCCGTGCTGCTGGCCGACGGCGCCAACCTCACCGCCGCGAGCGCTCAGGCGGGCCG
GCTGCTCGAGGCGTTGAGCGAACCGATCGCCCTGGATCCGATCACCATTCAGGTGGACGGCCGCATCGCCATCGCGCTGT
GTCCGGATCACTGCGACCATCCCCGGGAGCTGTTGAGCCGCGCCGAAACCGCGCTGGCGCACGCCAAATCGGCGCGAAGC
AAGATCGCGGTCTACGACTCCGCGTTCGAGGCCCACCGCGACAACGACACCAACCTCATCGAGGAACTGCGCACCGCGTT
GTTCGACACCGACGAGCTGAAACTGCACTACCAGCCCAAGATCGACGGGCGGGACGGCAGCATCCACAGCGTCGAGGCCG
TGTTGCGCTGGCAGCATCCCACCCGCGGGACGTTGCTGCCGGAGGAGTTCCTGCCCGTCGCCGAACGCGCCGGGTTGATG
CGCAAGATCTCCAACCGCACGCTGAGCATGGCGTTGCAACAGGTCCGCTCCTGGCGCGAAGAGGGTCTGCGCCTCACCGT
CGCGGTCAACCTGTCCACCACCAACCTGCTCGACATCGAGCTCGTCGGCACCGTGGAAAGACTGCTCGCCAACTACGACC
TGCCCGCGGACGCGCTCATCCTCGAGATCACCGAGAGCGCGCTGGTGGATTCGGTGCGATCCCGCAACACCGTGACCGCG
TTGCAGCGCTTGGGAATTCGCATCTCGATCGACGACTACGGCACCGGCTGGTCGTCACTGGCCCGCCTGCAGGAGGTTTC
GGTCGACGAGTTGAAGCTGGACCGCATTTTCGTGGCGCGCCTGGCTCACGATGCGCGCTCGGTCGCCATCGTGCGGTCCA
CGGTGGCGCTGGCGGACAACCTGGGCGCCGACCTGGTCGCCGAGGGCGTCGAAAACGAGGACACCTTGGACGCGCTGCGA
CGCTACGGCTGCAACATCACCCAGGGCTTCGTGCACACCCCGCCGCTGCCGCCCGACGAGCTGCGGGCCTGGATCGCCAG
CCACGCGCCGGATCCCAGCCAGTCCCGGGGGTGA

Upstream 100 bases:

>100_bases
GCACCGACCGCCGTTGCCGCCGTCGCCGCCGGGGGCAACGGCGCCGCCCCGGCGGCGCCGCCCGAGGTGGCAACGGCGGC
CACCTCGTCACCCTCCCCGC

Downstream 100 bases:

>100_bases
GTTCGCCCGGGAGTCAGAACAGCTCCTTGGCCAGCAGCTCCAGCGTCGCGACCCGGGCCGGCGCGGTGGCGGGGTCCGTC
CCGCGGCGGGCCGACGCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 757; Mature: 756

Protein sequence:

>757_residues
MTPPVGPPRGIRAALGMLAIGVVAFSVSSVAHPDAGHGIFSATALYSALNAVAAGLIALRACRIPADRWAWALIAAGMAC
SAVGDVVYAVWVPDGRSPSVADPEYLAYYPFVYAGLLLLMRARLKRLPIAVQLDSVVCALTLTAVAAALTAGPLHQAAVH
APKTVWVGLAYPWCDLMLLALAAGMLPILGWRNEIRWALLVAGLVLFAVADGAYLFQTAAGSYRVGSLLDVCWPASSVLI
AMASWAPPPATATQARRRFSPYVTPVASTIVALGVIVLAHHSRSAATLAALSLVVGAGRFSLTFRDVSLLHSHDRHAMTD
ELTALPNRRQLVTALQGLPASASPGAGSMPSRANPRRALLLLSLSDFHEITESIGRQFGDELLCHIANRLAGSVRRDDLL
ARVGDDQFAVLLADGANLTAASAQAGRLLEALSEPIALDPITIQVDGRIAIALCPDHCDHPRELLSRAETALAHAKSARS
KIAVYDSAFEAHRDNDTNLIEELRTALFDTDELKLHYQPKIDGRDGSIHSVEAVLRWQHPTRGTLLPEEFLPVAERAGLM
RKISNRTLSMALQQVRSWREEGLRLTVAVNLSTTNLLDIELVGTVERLLANYDLPADALILEITESALVDSVRSRNTVTA
LQRLGIRISIDDYGTGWSSLARLQEVSVDELKLDRIFVARLAHDARSVAIVRSTVALADNLGADLVAEGVENEDTLDALR
RYGCNITQGFVHTPPLPPDELRAWIASHAPDPSQSRG

Sequences:

>Translated_757_residues
MTPPVGPPRGIRAALGMLAIGVVAFSVSSVAHPDAGHGIFSATALYSALNAVAAGLIALRACRIPADRWAWALIAAGMAC
SAVGDVVYAVWVPDGRSPSVADPEYLAYYPFVYAGLLLLMRARLKRLPIAVQLDSVVCALTLTAVAAALTAGPLHQAAVH
APKTVWVGLAYPWCDLMLLALAAGMLPILGWRNEIRWALLVAGLVLFAVADGAYLFQTAAGSYRVGSLLDVCWPASSVLI
AMASWAPPPATATQARRRFSPYVTPVASTIVALGVIVLAHHSRSAATLAALSLVVGAGRFSLTFRDVSLLHSHDRHAMTD
ELTALPNRRQLVTALQGLPASASPGAGSMPSRANPRRALLLLSLSDFHEITESIGRQFGDELLCHIANRLAGSVRRDDLL
ARVGDDQFAVLLADGANLTAASAQAGRLLEALSEPIALDPITIQVDGRIAIALCPDHCDHPRELLSRAETALAHAKSARS
KIAVYDSAFEAHRDNDTNLIEELRTALFDTDELKLHYQPKIDGRDGSIHSVEAVLRWQHPTRGTLLPEEFLPVAERAGLM
RKISNRTLSMALQQVRSWREEGLRLTVAVNLSTTNLLDIELVGTVERLLANYDLPADALILEITESALVDSVRSRNTVTA
LQRLGIRISIDDYGTGWSSLARLQEVSVDELKLDRIFVARLAHDARSVAIVRSTVALADNLGADLVAEGVENEDTLDALR
RYGCNITQGFVHTPPLPPDELRAWIASHAPDPSQSRG
>Mature_756_residues
TPPVGPPRGIRAALGMLAIGVVAFSVSSVAHPDAGHGIFSATALYSALNAVAAGLIALRACRIPADRWAWALIAAGMACS
AVGDVVYAVWVPDGRSPSVADPEYLAYYPFVYAGLLLLMRARLKRLPIAVQLDSVVCALTLTAVAAALTAGPLHQAAVHA
PKTVWVGLAYPWCDLMLLALAAGMLPILGWRNEIRWALLVAGLVLFAVADGAYLFQTAAGSYRVGSLLDVCWPASSVLIA
MASWAPPPATATQARRRFSPYVTPVASTIVALGVIVLAHHSRSAATLAALSLVVGAGRFSLTFRDVSLLHSHDRHAMTDE
LTALPNRRQLVTALQGLPASASPGAGSMPSRANPRRALLLLSLSDFHEITESIGRQFGDELLCHIANRLAGSVRRDDLLA
RVGDDQFAVLLADGANLTAASAQAGRLLEALSEPIALDPITIQVDGRIAIALCPDHCDHPRELLSRAETALAHAKSARSK
IAVYDSAFEAHRDNDTNLIEELRTALFDTDELKLHYQPKIDGRDGSIHSVEAVLRWQHPTRGTLLPEEFLPVAERAGLMR
KISNRTLSMALQQVRSWREEGLRLTVAVNLSTTNLLDIELVGTVERLLANYDLPADALILEITESALVDSVRSRNTVTAL
QRLGIRISIDDYGTGWSSLARLQEVSVDELKLDRIFVARLAHDARSVAIVRSTVALADNLGADLVAEGVENEDTLDALRR
YGCNITQGFVHTPPLPPDELRAWIASHAPDPSQSRG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=434, Percent_Identity=32.258064516129, Blast_Score=216, Evalue=4e-57,
Organism=Escherichia coli, GI87081921, Length=439, Percent_Identity=28.0182232346241, Blast_Score=182, Evalue=5e-47,
Organism=Escherichia coli, GI1790496, Length=265, Percent_Identity=29.0566037735849, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI226510982, Length=434, Percent_Identity=26.2672811059908, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=30.8943089430894, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI87081845, Length=251, Percent_Identity=29.0836653386454, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=26.9709543568465, Blast_Score=118, Evalue=2e-27,
Organism=Escherichia coli, GI1788849, Length=240, Percent_Identity=34.5833333333333, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=28, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1786507, Length=243, Percent_Identity=28.3950617283951, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787055, Length=297, Percent_Identity=29.2929292929293, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI87082096, Length=272, Percent_Identity=30.5147058823529, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1788381, Length=460, Percent_Identity=24.7826086956522, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 81217; Mature: 81086

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS50883 EAL ; PS50887 GGDEF ; PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPPVGPPRGIRAALGMLAIGVVAFSVSSVAHPDAGHGIFSATALYSALNAVAAGLIALR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ACRIPADRWAWALIAAGMACSAVGDVVYAVWVPDGRSPSVADPEYLAYYPFVYAGLLLLM
HHCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RARLKRLPIAVQLDSVVCALTLTAVAAALTAGPLHQAAVHAPKTVWVGLAYPWCDLMLLA
HHHHHHCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCHHHHHHHHHH
LAAGMLPILGWRNEIRWALLVAGLVLFAVADGAYLFQTAAGSYRVGSLLDVCWPASSVLI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEEHHCCCCCCHHHHHHHHCCHHHHHH
AMASWAPPPATATQARRRFSPYVTPVASTIVALGVIVLAHHSRSAATLAALSLVVGAGRF
HHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE
SLTFRDVSLLHSHDRHAMTDELTALPNRRQLVTALQGLPASASPGAGSMPSRANPRRALL
EEEEHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
LLSLSDFHEITESIGRQFGDELLCHIANRLAGSVRRDDLLARVGDDQFAVLLADGANLTA
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCEE
ASAQAGRLLEALSEPIALDPITIQVDGRIAIALCPDHCDHPRELLSRAETALAHAKSARS
CHHHHHHHHHHHCCCCEECCEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
KIAVYDSAFEAHRDNDTNLIEELRTALFDTDELKLHYQPKIDGRDGSIHSVEAVLRWQHP
EEEEEHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
TRGTLLPEEFLPVAERAGLMRKISNRTLSMALQQVRSWREEGLRLTVAVNLSTTNLLDIE
CCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEE
LVGTVERLLANYDLPADALILEITESALVDSVRSRNTVTALQRLGIRISIDDYGTGWSSL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEECCCCCCHHHH
ARLQEVSVDELKLDRIFVARLAHDARSVAIVRSTVALADNLGADLVAEGVENEDTLDALR
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHH
RYGCNITQGFVHTPPLPPDELRAWIASHAPDPSQSRG
HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TPPVGPPRGIRAALGMLAIGVVAFSVSSVAHPDAGHGIFSATALYSALNAVAAGLIALR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ACRIPADRWAWALIAAGMACSAVGDVVYAVWVPDGRSPSVADPEYLAYYPFVYAGLLLLM
HHCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RARLKRLPIAVQLDSVVCALTLTAVAAALTAGPLHQAAVHAPKTVWVGLAYPWCDLMLLA
HHHHHHCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCHHHHHHHHHH
LAAGMLPILGWRNEIRWALLVAGLVLFAVADGAYLFQTAAGSYRVGSLLDVCWPASSVLI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEEHHCCCCCCHHHHHHHHCCHHHHHH
AMASWAPPPATATQARRRFSPYVTPVASTIVALGVIVLAHHSRSAATLAALSLVVGAGRF
HHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE
SLTFRDVSLLHSHDRHAMTDELTALPNRRQLVTALQGLPASASPGAGSMPSRANPRRALL
EEEEHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
LLSLSDFHEITESIGRQFGDELLCHIANRLAGSVRRDDLLARVGDDQFAVLLADGANLTA
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCEE
ASAQAGRLLEALSEPIALDPITIQVDGRIAIALCPDHCDHPRELLSRAETALAHAKSARS
CHHHHHHHHHHHCCCCEECCEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
KIAVYDSAFEAHRDNDTNLIEELRTALFDTDELKLHYQPKIDGRDGSIHSVEAVLRWQHP
EEEEEHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
TRGTLLPEEFLPVAERAGLMRKISNRTLSMALQQVRSWREEGLRLTVAVNLSTTNLLDIE
CCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEE
LVGTVERLLANYDLPADALILEITESALVDSVRSRNTVTALQRLGIRISIDDYGTGWSSL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEECCCCCCHHHH
ARLQEVSVDELKLDRIFVARLAHDARSVAIVRSTVALADNLGADLVAEGVENEDTLDALR
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHH
RYGCNITQGFVHTPPLPPDELRAWIASHAPDPSQSRG
HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]