Click here to switch to the map view.

The map label for this gene is mmpS5 [H]

Identifier: 41408336

GI number: 41408336

Start: 2501028

End: 2501522

Strand: Direct

Name: mmpS5 [H]

Synonym: MAP2238

Alternate gene names: 41408336

Gene position: 2501028-2501522 (Clockwise)

Preceding gene: 41408335

Following gene: 41408337

Centisome position: 51.78

GC content: 62.63

Gene sequence:

>495_bases
TTGGTGAGCTTTGCGGAAGGCGGTCAGGTGGTGGCTGGTCCAAACTCAGAGAGCCGCCCAGGCGTCCTGAGCCGCGCGCG
CAAACAAGCGTGGATACCGCTGGTGTTGGTGGTCGTGCTGGCCGTCTCGGCGCTGATCGTGTCGCGGTTGCACAAGATCT
TCGGGTCGGAGGATCTCAACGCGAACGCGGGCAAGGGGATCGAAATCGTGCAGTTCAACCCGAAGGTCGTCGTCTACGAA
ATCTCCGGCGCGCCGGGCAGCACGGCCAACATCAACTACTGGGACGAGAACGCCAACACCCATCAGGTCAACAACGCCCC
GCTGCCCTGGTCGACCACGATCTCGACCACGCTGCCCTCGGTGAGCGCCAACATCATGGCCCAAAGCGACGGCAGCACCA
TCAGCTGCAAGATCACCGTGGACGGCGTCGTCCGCGACAACCAGAACTCCGACGGCCATAACGCCCAAACCTTCTGCCTG
GTGAAGTCCGCATGA

Upstream 100 bases:

>100_bases
CGCCACACCGGACGGCCCCCGGGAGGAACGCTTGCGTGCACTAAGGTTAGGATGCCTAGCTGAGCAAATGTTCCGTTGAC
ATTGGTGTCGTCGGCGACGG

Downstream 100 bases:

>100_bases
GCGACGCGAGCAACAAGACCCAACCCGACCTGAGCGCGGCCGACACCGGTCCGATCAACGTCAAGGGGCTGTCCAAGGCC
GAGCGGGGCCACCGGCCCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MVSFAEGGQVVAGPNSESRPGVLSRARKQAWIPLVLVVVLAVSALIVSRLHKIFGSEDLNANAGKGIEIVQFNPKVVVYE
ISGAPGSTANINYWDENANTHQVNNAPLPWSTTISTTLPSVSANIMAQSDGSTISCKITVDGVVRDNQNSDGHNAQTFCL
VKSA

Sequences:

>Translated_164_residues
MVSFAEGGQVVAGPNSESRPGVLSRARKQAWIPLVLVVVLAVSALIVSRLHKIFGSEDLNANAGKGIEIVQFNPKVVVYE
ISGAPGSTANINYWDENANTHQVNNAPLPWSTTISTTLPSVSANIMAQSDGSTISCKITVDGVVRDNQNSDGHNAQTFCL
VKSA
>Mature_164_residues
MVSFAEGGQVVAGPNSESRPGVLSRARKQAWIPLVLVVVLAVSALIVSRLHKIFGSEDLNANAGKGIEIVQFNPKVVVYE
ISGAPGSTANINYWDENANTHQVNNAPLPWSTTISTTLPSVSANIMAQSDGSTISCKITVDGVVRDNQNSDGHNAQTFCL
VKSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mmpS family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008693 [H]

Pfam domain/function: PF05423 Mycobact_memb [H]

EC number: NA

Molecular weight: Translated: 17317; Mature: 17317

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSFAEGGQVVAGPNSESRPGVLSRARKQAWIPLVLVVVLAVSALIVSRLHKIFGSEDLN
CCEECCCCEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ANAGKGIEIVQFNPKVVVYEISGAPGSTANINYWDENANTHQVNNAPLPWSTTISTTLPS
CCCCCCEEEEEECCEEEEEEECCCCCCCCEEEEECCCCCCEECCCCCCCCCCCHHCCCCC
VSANIMAQSDGSTISCKITVDGVVRDNQNSDGHNAQTFCLVKSA
CCEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MVSFAEGGQVVAGPNSESRPGVLSRARKQAWIPLVLVVVLAVSALIVSRLHKIFGSEDLN
CCEECCCCEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ANAGKGIEIVQFNPKVVVYEISGAPGSTANINYWDENANTHQVNNAPLPWSTTISTTLPS
CCCCCCEEEEEECCEEEEEEECCCCCCCCEEEEECCCCCCEECCCCCCCCCCCHHCCCCC
VSANIMAQSDGSTISCKITVDGVVRDNQNSDGHNAQTFCLVKSA
CCEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]