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The map label for this gene is 41407626

Identifier: 41407626

GI number: 41407626

Start: 1678043

End: 1678744

Strand: Direct

Name: 41407626

Synonym: MAP1528

Alternate gene names: NA

Gene position: 1678043-1678744 (Clockwise)

Preceding gene: 41407624

Following gene: 41407627

Centisome position: 34.74

GC content: 69.37

Gene sequence:

>702_bases
TTGTGTCAGACTGACCGGGTGGGCAAACGCCAGCAGTCCCGGGAGCAGATCGAGGCGCGCATCATCGAACTCGGTCGCCG
CCAACTGGTGGACCGGGGCGCGGCCGGACTGTCGGTCCGCGCCATCGCCCGCGACCTGGGCATGGTGTCCTCGGCGGTGT
ACCGCTACGTGTCCAGCCGCGACGAGTTGCTGACCCTGCTGCTGGTGGACGCCTATTCCGACCTGGCCGACACCGTGGAC
CGGGCCCGCGAAACCGCGGGCGAACAGTGGAGCGACGACGTCATCGCCATCGCGCGCGCCACCCGGCGCTGGGCCGTCGA
GCACCCGGCATGCTGGGCCCTGCTCTACGGCAGCCCGGTTCCCGGGTACCACGCGCCCCCCGAACGCACCGTTGCCGCCG
GCACCCGGGTGGTCGCGGCGTTGTTCGACGCCGTGGCGGCGGGGATCACCACCGGCGATATCCGGCTGACCAATGACCCT
GCGCCGCAACCGATGTCATCCGACTTTGAACGGATCCGGCACGAATTCGGCTTCCCGGGCGATGACCTGGTGATCGCCAA
GTGCTTTTTGCTGTGGGCGGGGGTGCTGGGCGCGATCAGCCTCGAGGTGTTCGGACAGTACGGGGCGGACACGCTGACCG
ATGTGGAAGCCGTCTTCGACGCCCAGCTGCGGCTGCTGGTCGACGTGCTGACCCGGCACTGA

Upstream 100 bases:

>100_bases
CGTCCTCTCAGCGAATCCCGGGGCAATGCCAGAGAGCGGTGCTCTCCATTTCGAACACGCTGCCACACCGCGGTCGGGAA
AGCAAGAGCGGTGTTCTCGG

Downstream 100 bases:

>100_bases
TCCGGCCACGGCCGGTCACGGACCGCGGAGCACGGAATTAGAACGTGTTCACCCGCGGTTTCCCGGTTCGGACCGGATCG
GCATGGCAAATTCTTTCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MCQTDRVGKRQQSREQIEARIIELGRRQLVDRGAAGLSVRAIARDLGMVSSAVYRYVSSRDELLTLLLVDAYSDLADTVD
RARETAGEQWSDDVIAIARATRRWAVEHPACWALLYGSPVPGYHAPPERTVAAGTRVVAALFDAVAAGITTGDIRLTNDP
APQPMSSDFERIRHEFGFPGDDLVIAKCFLLWAGVLGAISLEVFGQYGADTLTDVEAVFDAQLRLLVDVLTRH

Sequences:

>Translated_233_residues
MCQTDRVGKRQQSREQIEARIIELGRRQLVDRGAAGLSVRAIARDLGMVSSAVYRYVSSRDELLTLLLVDAYSDLADTVD
RARETAGEQWSDDVIAIARATRRWAVEHPACWALLYGSPVPGYHAPPERTVAAGTRVVAALFDAVAAGITTGDIRLTNDP
APQPMSSDFERIRHEFGFPGDDLVIAKCFLLWAGVLGAISLEVFGQYGADTLTDVEAVFDAQLRLLVDVLTRH
>Mature_233_residues
MCQTDRVGKRQQSREQIEARIIELGRRQLVDRGAAGLSVRAIARDLGMVSSAVYRYVSSRDELLTLLLVDAYSDLADTVD
RARETAGEQWSDDVIAIARATRRWAVEHPACWALLYGSPVPGYHAPPERTVAAGTRVVAALFDAVAAGITTGDIRLTNDP
APQPMSSDFERIRHEFGFPGDDLVIAKCFLLWAGVLGAISLEVFGQYGADTLTDVEAVFDAQLRLLVDVLTRH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 25539; Mature: 25539

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCQTDRVGKRQQSREQIEARIIELGRRQLVDRGAAGLSVRAIARDLGMVSSAVYRYVSSR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCH
DELLTLLLVDAYSDLADTVDRARETAGEQWSDDVIAIARATRRWAVEHPACWALLYGSPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHEEEEECCCC
PGYHAPPERTVAAGTRVVAALFDAVAAGITTGDIRLTNDPAPQPMSSDFERIRHEFGFPG
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCC
DDLVIAKCFLLWAGVLGAISLEVFGQYGADTLTDVEAVFDAQLRLLVDVLTRH
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MCQTDRVGKRQQSREQIEARIIELGRRQLVDRGAAGLSVRAIARDLGMVSSAVYRYVSSR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCH
DELLTLLLVDAYSDLADTVDRARETAGEQWSDDVIAIARATRRWAVEHPACWALLYGSPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHEEEEECCCC
PGYHAPPERTVAAGTRVVAALFDAVAAGITTGDIRLTNDPAPQPMSSDFERIRHEFGFPG
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCC
DDLVIAKCFLLWAGVLGAISLEVFGQYGADTLTDVEAVFDAQLRLLVDVLTRH
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]