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The map label for this gene is 41407422

Identifier: 41407422

GI number: 41407422

Start: 1416085

End: 1417611

Strand: Direct

Name: 41407422

Synonym: MAP1324

Alternate gene names: NA

Gene position: 1416085-1417611 (Clockwise)

Preceding gene: 41407421

Following gene: 41407423

Centisome position: 29.32

GC content: 70.01

Gene sequence:

>1527_bases
ATGGTTCTGGCAGACGTGCAAGCGCCGTCGCGCTACTGGGAAAACATCGCCGGCGAAACCGACCTCGACGTCACCGACAT
CACCGGCACCTTGCCCGACGGCCTCGTCGGCACCCTGTACCGCAACGGCTCGGGCCGCTGGACGGTGGGATCGACGCAGG
TCGAGAGCATTTTCGACGCCGACGGGATGGTCAGCGCGTTCGTGCTCGACGGGTCCGGGGTGCGGTTCCGCAACCGGTTC
GTCCGCACCCGCCACTACCTGAGGTCGACCGCTGCGGGGCGGCTGGTCGACCGCGGGTTCGCCTACCAGCGACCCGGCGG
CCCGCGGGCCAATGCGCTGCGGCTGCCGGCCAACACCGCCAACACCAGCGTCATGGTTCACCGCAACCAGCTGCTGGCGC
TGTGGGAGGGCGGGCCACCGCACGAACTCGACCTCGACACGCTGGACACCATCGGGCCGTGCAACCTGGGCGGGGCGCTG
CGGGGTCCGGTGCGCGCCTATTCGGCGCACTACCGCTACGACCCGATGACCAACACCAAGGTCAACTTCGGCTTCGACCC
GTACGTCCCGCGCATCGACCCCGGCCATGCGCTGCGCGGTCCCCGGCGGCTGCGGCGGCTGCGGGAGCTGGCCGCCGAGG
CGGTGCCCCGGGTGCGGCTGCGCCTGTATGAGACCGGCGCCGACGGGGTGACGCGATACCTGCGCGCGGTGCCGCTGCCG
GGCATGGGCGTGGTGCACGACATGGCGTTGACCACGCGCTACGCCGTCTTCGTGCTGTCCCCGCTGCGGATCAACCCGTG
GGCGTTGACCGGCCGCCAATCTTATTGGGAATCCATACGTTTCAAGCCGGACGCGCCGTCGTATTTCGTGCTCGCCCCAC
GCGACGGCGGGGCGGTCCGGGTGGTCGAGACCGACCCGTTCTATCACTGGCATTTCACCAACGCCTACGACGACGGCGAC
GACGTCGTCGTCGAACTGCCGCGGTTCGCGCCGCAGACCTACGCCGGCATGAAGAACTACACCGCGCACATCCGCTCGGA
CATCGCGCAGGTCGACGACTACGGAGCCATCGAGGACGCCGTGGTGCTCACCCGGTTCCGGATCGCGGCGTCGGGCCGGG
TGACCCGCGAGCCACTGGCCGATTTCGGCTGCGAATTCCCCCAGATCGACCCCCGCCGCGGCACCATGCGCCACCACGTC
TCCTACCTGACCGTCCAGGACCCGGCCAAGTTCCCCGGACAAGGGATAGCCCGCGTCGACCACCGCACCGGCGAGGCGCA
AACGTACTGCCCACCCGGGCAGGTGTTGGTGGAGCCGATCTTCGTGCCGCGGCCCGGCGGCACCGCCGAGGACGACGGGT
GGCTGCTCACCGTCGGCTATGACGAATCGCGGCATCGCAGCAGGTTGATGGTGGTGGACGCGGCGCACGTGGCCGACGGG
CCGGTCGCGGAGGCGTGGCTGCCGTTTCACGTCCCGATGAGCTATCACGGCACCTTCACCACCCGGGTGGCGCAGCGGAC
CGGGTGA

Upstream 100 bases:

>100_bases
TGACCGCGCTGTGCTGGGACGGCGGCGCGGCGCTGCCGTTCGACGCCGACGACATCAGAACCATTGACAGCGGACCCCAT
TAATAAACACACTGTCTTTT

Downstream 100 bases:

>100_bases
CGCGGCGGGTCCGGGTTTGGCCAGCTTGCGCACAGTCGAGTAGCCTCGACAGGTAAATCCCAATTGTCCCTACGACCAAA
CCTGTCCGGAGCAACCCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: ACO; 8'-apo-beta-carotenal 15,15'-oxygenase; Diox1 [H]

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MVLADVQAPSRYWENIAGETDLDVTDITGTLPDGLVGTLYRNGSGRWTVGSTQVESIFDADGMVSAFVLDGSGVRFRNRF
VRTRHYLRSTAAGRLVDRGFAYQRPGGPRANALRLPANTANTSVMVHRNQLLALWEGGPPHELDLDTLDTIGPCNLGGAL
RGPVRAYSAHYRYDPMTNTKVNFGFDPYVPRIDPGHALRGPRRLRRLRELAAEAVPRVRLRLYETGADGVTRYLRAVPLP
GMGVVHDMALTTRYAVFVLSPLRINPWALTGRQSYWESIRFKPDAPSYFVLAPRDGGAVRVVETDPFYHWHFTNAYDDGD
DVVVELPRFAPQTYAGMKNYTAHIRSDIAQVDDYGAIEDAVVLTRFRIAASGRVTREPLADFGCEFPQIDPRRGTMRHHV
SYLTVQDPAKFPGQGIARVDHRTGEAQTYCPPGQVLVEPIFVPRPGGTAEDDGWLLTVGYDESRHRSRLMVVDAAHVADG
PVAEAWLPFHVPMSYHGTFTTRVAQRTG

Sequences:

>Translated_508_residues
MVLADVQAPSRYWENIAGETDLDVTDITGTLPDGLVGTLYRNGSGRWTVGSTQVESIFDADGMVSAFVLDGSGVRFRNRF
VRTRHYLRSTAAGRLVDRGFAYQRPGGPRANALRLPANTANTSVMVHRNQLLALWEGGPPHELDLDTLDTIGPCNLGGAL
RGPVRAYSAHYRYDPMTNTKVNFGFDPYVPRIDPGHALRGPRRLRRLRELAAEAVPRVRLRLYETGADGVTRYLRAVPLP
GMGVVHDMALTTRYAVFVLSPLRINPWALTGRQSYWESIRFKPDAPSYFVLAPRDGGAVRVVETDPFYHWHFTNAYDDGD
DVVVELPRFAPQTYAGMKNYTAHIRSDIAQVDDYGAIEDAVVLTRFRIAASGRVTREPLADFGCEFPQIDPRRGTMRHHV
SYLTVQDPAKFPGQGIARVDHRTGEAQTYCPPGQVLVEPIFVPRPGGTAEDDGWLLTVGYDESRHRSRLMVVDAAHVADG
PVAEAWLPFHVPMSYHGTFTTRVAQRTG
>Mature_508_residues
MVLADVQAPSRYWENIAGETDLDVTDITGTLPDGLVGTLYRNGSGRWTVGSTQVESIFDADGMVSAFVLDGSGVRFRNRF
VRTRHYLRSTAAGRLVDRGFAYQRPGGPRANALRLPANTANTSVMVHRNQLLALWEGGPPHELDLDTLDTIGPCNLGGAL
RGPVRAYSAHYRYDPMTNTKVNFGFDPYVPRIDPGHALRGPRRLRRLRELAAEAVPRVRLRLYETGADGVTRYLRAVPLP
GMGVVHDMALTTRYAVFVLSPLRINPWALTGRQSYWESIRFKPDAPSYFVLAPRDGGAVRVVETDPFYHWHFTNAYDDGD
DVVVELPRFAPQTYAGMKNYTAHIRSDIAQVDDYGAIEDAVVLTRFRIAASGRVTREPLADFGCEFPQIDPRRGTMRHHV
SYLTVQDPAKFPGQGIARVDHRTGEAQTYCPPGQVLVEPIFVPRPGGTAEDDGWLLTVGYDESRHRSRLMVVDAAHVADG
PVAEAWLPFHVPMSYHGTFTTRVAQRTG

Specific function: Cleaves a number of carotenals and carotenols in the all-trans configuration at the 15-15' double bond producing retinal or retinol, respectively. Also shows activity toward lycopenals and the corresponding alcohols. Does not cleave beta- carotene or lyco

COG id: COG3670

COG function: function code Q; Lignostilbene-alpha,beta-dioxygenase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid oxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004294 [H]

Pfam domain/function: PF03055 RPE65 [H]

EC number: =1.14.99.41 [H]

Molecular weight: Translated: 56455; Mature: 56455

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLADVQAPSRYWENIAGETDLDVTDITGTLPDGLVGTLYRNGSGRWTVGSTQVESIFDA
CEEECCCCCHHHHHHCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEEECCHHHHHHHCC
DGMVSAFVLDGSGVRFRNRFVRTRHYLRSTAAGRLVDRGFAYQRPGGPRANALRLPANTA
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
NTSVMVHRNQLLALWEGGPPHELDLDTLDTIGPCNLGGALRGPVRAYSAHYRYDPMTNTK
CCEEEEEECEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEECCCCCCE
VNFGFDPYVPRIDPGHALRGPRRLRRLRELAAEAVPRVRLRLYETGADGVTRYLRAVPLP
EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHCCCC
GMGVVHDMALTTRYAVFVLSPLRINPWALTGRQSYWESIRFKPDAPSYFVLAPRDGGAVR
CCCHHHHHHHHHEEEEEEEECCEECCEEECCCHHHHHHCCCCCCCCCEEEEEECCCCEEE
VVETDPFYHWHFTNAYDDGDDVVVELPRFAPQTYAGMKNYTAHIRSDIAQVDDYGAIEDA
EEECCCEEEEEECCCCCCCCCEEEECCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCHHHH
VVLTRFRIAASGRVTREPLADFGCEFPQIDPRRGTMRHHVSYLTVQDPAKFPGQGIARVD
HEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCHHHEEEEEEEECCCCCCCCCCEEEC
HRTGEAQTYCPPGQVLVEPIFVPRPGGTAEDDGWLLTVGYDESRHRSRLMVVDAAHVADG
CCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEHHCCCC
PVAEAWLPFHVPMSYHGTFTTRVAQRTG
CCHHCEEEEECCCEECCCEEEEHHHCCC
>Mature Secondary Structure
MVLADVQAPSRYWENIAGETDLDVTDITGTLPDGLVGTLYRNGSGRWTVGSTQVESIFDA
CEEECCCCCHHHHHHCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEEECCHHHHHHHCC
DGMVSAFVLDGSGVRFRNRFVRTRHYLRSTAAGRLVDRGFAYQRPGGPRANALRLPANTA
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
NTSVMVHRNQLLALWEGGPPHELDLDTLDTIGPCNLGGALRGPVRAYSAHYRYDPMTNTK
CCEEEEEECEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEECCCCCCE
VNFGFDPYVPRIDPGHALRGPRRLRRLRELAAEAVPRVRLRLYETGADGVTRYLRAVPLP
EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHCCCC
GMGVVHDMALTTRYAVFVLSPLRINPWALTGRQSYWESIRFKPDAPSYFVLAPRDGGAVR
CCCHHHHHHHHHEEEEEEEECCEECCEEECCCHHHHHHCCCCCCCCCEEEEEECCCCEEE
VVETDPFYHWHFTNAYDDGDDVVVELPRFAPQTYAGMKNYTAHIRSDIAQVDDYGAIEDA
EEECCCEEEEEECCCCCCCCCEEEECCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCHHHH
VVLTRFRIAASGRVTREPLADFGCEFPQIDPRRGTMRHHVSYLTVQDPAKFPGQGIARVD
HEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCHHHEEEEEEEECCCCCCCCCCEEEC
HRTGEAQTYCPPGQVLVEPIFVPRPGGTAEDDGWLLTVGYDESRHRSRLMVVDAAHVADG
CCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEHHCCCC
PVAEAWLPFHVPMSYHGTFTTRVAQRTG
CCHHCEEEEECCCEECCCEEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]