| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is 41407341
Identifier: 41407341
GI number: 41407341
Start: 1321445
End: 1322014
Strand: Direct
Name: 41407341
Synonym: MAP1243
Alternate gene names: NA
Gene position: 1321445-1322014 (Clockwise)
Preceding gene: 41407340
Following gene: 41407342
Centisome position: 27.36
GC content: 69.12
Gene sequence:
>570_bases ATGCCCACAATGCGCCTGCCCAAACTGCCCCTGGACGAAGCCAAGGCCGCCGCCGACGAAGCAGCCGTGCCCAACTACAT GGCCGAGCTCAGCATCTTCCAGGTGCTGCTCAACCATCCGCCGCTGGCCCGTGCCATCAACGACCTGCTCGCCACCATGC TCTGGCACGGCGCGCTGGATTCCCGGTTGCGCGAATTGGTCATCATGCGCATCGGCTGGCTCACCGGCTGCGACTACGAG TGGACGCAGCACTGGCGGGTCGCGTCCCGGCTCGGCGTGCCCGGCGACGATCTGCTCGGGGTGCGAGATTGGCGGAACTA CCCGGGGTTTGGGCCCACCGAGCGGGCCGTGCTGGCCGCCACCGACGACGTGGTGCGCCACGGCTCGGTCAGCGCCGCCA GCTGGGCGCAGTGCGAGCACGAATTCAACGGGGACACAACGGTTCTCGTTGAGCTGGTCACGGTCATCGGCGCGTGGCGG ATGGTCGCCTCGATCCTGCAGAGCCTCGAGGTGCCGTTGGAGGACGGGGTGGCGAGCTGGCCTCCGGACGGCCGGGAGCC CGCGAGCTGA
Upstream 100 bases:
>100_bases CTCTGGTGATAGGTGCGCGGGCCGTCGTCGCCGCGCCCGGCGCTGGCTACCATGACCGTAGAACGCGACGGTCCCGCCAG TACCGAGGAGTGCTCACCCG
Downstream 100 bases:
>100_bases CGCCGAATCACCCACGGCCGTAACCGATTGACTTCTCTGTCGAGAGCTCTTAGCGTCGGGCAATGAGAACCAGGGTCGCC GAGTTGCTCGGGGTGGAATT
Product: hypothetical protein
Products: NA
Alternate protein names: Carboxymuconolactone Decarboxylase Family; Alkylhydroperoxidase AhpD Family Core Domain-Containing; Alkylhydroperoxidase
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MPTMRLPKLPLDEAKAAADEAAVPNYMAELSIFQVLLNHPPLARAINDLLATMLWHGALDSRLRELVIMRIGWLTGCDYE WTQHWRVASRLGVPGDDLLGVRDWRNYPGFGPTERAVLAATDDVVRHGSVSAASWAQCEHEFNGDTTVLVELVTVIGAWR MVASILQSLEVPLEDGVASWPPDGREPAS
Sequences:
>Translated_189_residues MPTMRLPKLPLDEAKAAADEAAVPNYMAELSIFQVLLNHPPLARAINDLLATMLWHGALDSRLRELVIMRIGWLTGCDYE WTQHWRVASRLGVPGDDLLGVRDWRNYPGFGPTERAVLAATDDVVRHGSVSAASWAQCEHEFNGDTTVLVELVTVIGAWR MVASILQSLEVPLEDGVASWPPDGREPAS >Mature_188_residues PTMRLPKLPLDEAKAAADEAAVPNYMAELSIFQVLLNHPPLARAINDLLATMLWHGALDSRLRELVIMRIGWLTGCDYEW TQHWRVASRLGVPGDDLLGVRDWRNYPGFGPTERAVLAATDDVVRHGSVSAASWAQCEHEFNGDTTVLVELVTVIGAWRM VASILQSLEVPLEDGVASWPPDGREPAS
Specific function: Unknown
COG id: COG2128
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20849; Mature: 20718
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTMRLPKLPLDEAKAAADEAAVPNYMAELSIFQVLLNHPPLARAINDLLATMLWHGALD CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH SRLRELVIMRIGWLTGCDYEWTQHWRVASRLGVPGDDLLGVRDWRNYPGFGPTERAVLAA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHCCCHHHCCCCCCCCCCCEEEHH TDDVVRHGSVSAASWAQCEHEFNGDTTVLVELVTVIGAWRMVASILQSLEVPLEDGVASW HHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCC PPDGREPAS CCCCCCCCC >Mature Secondary Structure PTMRLPKLPLDEAKAAADEAAVPNYMAELSIFQVLLNHPPLARAINDLLATMLWHGALD CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH SRLRELVIMRIGWLTGCDYEWTQHWRVASRLGVPGDDLLGVRDWRNYPGFGPTERAVLAA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHCCCHHHCCCCCCCCCCCEEEHH TDDVVRHGSVSAASWAQCEHEFNGDTTVLVELVTVIGAWRMVASILQSLEVPLEDGVASW HHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCC PPDGREPAS CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA