| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is sgcX [C]
Identifier: 41407032
GI number: 41407032
Start: 963875
End: 965008
Strand: Direct
Name: sgcX [C]
Synonym: MAP0934
Alternate gene names: 41407032
Gene position: 963875-965008 (Clockwise)
Preceding gene: 41407031
Following gene: 41407033
Centisome position: 19.96
GC content: 69.31
Gene sequence:
>1134_bases ATGGCGCACCGCGACCGCGACTCGACCGACGAGCTGCTGCAAGAACTGCTGTGGACCTACGGGCCGTGCGGGCAGGAGGA CGCGGTGCGCGCCGTCATCGCCCGCGAATTGGAACCCGTCGTCGACGACCTGTGGACCGACGACGCCGGCAACCTGATCG GCTACGTCGCCGCCGACGCATCGCGGGGCGATGCCGGGGCGCCCGACCACCGGCACCGGACCGCGGCGATCCCCGGCACC GCCACCCGGGTCATGGCCCACATGGACGAGCTGTCCATGATCGTCAAACGGGTAGAACCCGATGGCACACTGCATTTGAC GCAGCTGGGCACCATGTACCCGGGCAACTTCGGGCTGGGTCCGGTCGCCGTGCTCGGCGACAACGAAACCCTCACCGCGG TACTGACTCTCGGCTCCGAACACACCACCAAGGAAAGCTCACGAATCTGGGAGACCAAGCCCGATCAGGGTGACCGATCG CTGGACTGGCATCACGTCTACGTCTTCACCGGCCGCAGCACCGACGAATTGGCCGCCGCGGGAGTGCACGCCGGCACCCG GGTGTGCGTGGACCGCAGCAAGAGATCGGTGGTCGAGATCGGCGACTACGTCGGCGCCTACTTCCTCGATGACCGCGCCG CAGTGACCGCGCTGCTCAACGCCGCCCGGATGCTGCGCGAACGCGGACAACGCCCCGCCGACGACGTGTACCTGGTGTTC ACCGCCAACGAAGAGATCGGCGGGGTGGGCGGCGCCTACGCCAGCGCCACCCTGCCCGGCGACCTGACCCTCGCGCTGGA AGTCGGCCCCACCGAACGCGAATACACCACCAGCGTCGCCGGCGGCCCGATCGTCGGTTACAGCGACGCGCTGTGCGTCT ACGACAAAAGCGTCGCCGACCGGCTGCTGAAAATCGCCACCGACCGCGGACTGACGCCGCAGCCGGCGGCGCTGGGCGCC TTCGAATCCGACGCGTCGCACGCCAAGGCAAGCGGGCTGACCGCCCGCGCCGGCCTGCTGTGCCTGCCCACGCTGAGCAC CCACGGCTACGAGGTGGTCGCGCGCAGCGCGATCGACGACATGGCCGCCATCGTGGTCGATTTCGTACTGCAGCCGGGCC GGCCGAACGGCTGA
Upstream 100 bases:
>100_bases CGCCCACGAGCTGGGGGTGGCACTGGCCTGAGTCGAGGCGGTTGGAGTGGCCGCAGGCCGGCGCGGGTACAGATGCTCTG AACCTGATCGAGAGGATCCG
Downstream 100 bases:
>100_bases CGCGGAGTCGGCCAAAACACCTCAACCCCGCTGGTCACCCTGTTAGTCTGGCGACGCTTCCGGACGCAGAACGATGGGGT TGGCATGTGGCACACGTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MAHRDRDSTDELLQELLWTYGPCGQEDAVRAVIARELEPVVDDLWTDDAGNLIGYVAADASRGDAGAPDHRHRTAAIPGT ATRVMAHMDELSMIVKRVEPDGTLHLTQLGTMYPGNFGLGPVAVLGDNETLTAVLTLGSEHTTKESSRIWETKPDQGDRS LDWHHVYVFTGRSTDELAAAGVHAGTRVCVDRSKRSVVEIGDYVGAYFLDDRAAVTALLNAARMLRERGQRPADDVYLVF TANEEIGGVGGAYASATLPGDLTLALEVGPTEREYTTSVAGGPIVGYSDALCVYDKSVADRLLKIATDRGLTPQPAALGA FESDASHAKASGLTARAGLLCLPTLSTHGYEVVARSAIDDMAAIVVDFVLQPGRPNG
Sequences:
>Translated_377_residues MAHRDRDSTDELLQELLWTYGPCGQEDAVRAVIARELEPVVDDLWTDDAGNLIGYVAADASRGDAGAPDHRHRTAAIPGT ATRVMAHMDELSMIVKRVEPDGTLHLTQLGTMYPGNFGLGPVAVLGDNETLTAVLTLGSEHTTKESSRIWETKPDQGDRS LDWHHVYVFTGRSTDELAAAGVHAGTRVCVDRSKRSVVEIGDYVGAYFLDDRAAVTALLNAARMLRERGQRPADDVYLVF TANEEIGGVGGAYASATLPGDLTLALEVGPTEREYTTSVAGGPIVGYSDALCVYDKSVADRLLKIATDRGLTPQPAALGA FESDASHAKASGLTARAGLLCLPTLSTHGYEVVARSAIDDMAAIVVDFVLQPGRPNG >Mature_376_residues AHRDRDSTDELLQELLWTYGPCGQEDAVRAVIARELEPVVDDLWTDDAGNLIGYVAADASRGDAGAPDHRHRTAAIPGTA TRVMAHMDELSMIVKRVEPDGTLHLTQLGTMYPGNFGLGPVAVLGDNETLTAVLTLGSEHTTKESSRIWETKPDQGDRSL DWHHVYVFTGRSTDELAAAGVHAGTRVCVDRSKRSVVEIGDYVGAYFLDDRAAVTALLNAARMLRERGQRPADDVYLVFT ANEEIGGVGGAYASATLPGDLTLALEVGPTEREYTTSVAGGPIVGYSDALCVYDKSVADRLLKIATDRGLTPQPAALGAF ESDASHAKASGLTARAGLLCLPTLSTHGYEVVARSAIDDMAAIVVDFVLQPGRPNG
Specific function: Unknown
COG id: COG1363
COG function: function code G; Cellulase M and related proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M42 family [H]
Homologues:
Organism=Escherichia coli, GI87082417, Length=267, Percent_Identity=25.4681647940075, Blast_Score=64, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008007 [H]
Pfam domain/function: PF05343 Peptidase_M42 [H]
EC number: NA
Molecular weight: Translated: 40170; Mature: 40039
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHRDRDSTDELLQELLWTYGPCGQEDAVRAVIARELEPVVDDLWTDDAGNLIGYVAADA CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC SRGDAGAPDHRHRTAAIPGTATRVMAHMDELSMIVKRVEPDGTLHLTQLGTMYPGNFGLG CCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC PVAVLGDNETLTAVLTLGSEHTTKESSRIWETKPDQGDRSLDWHHVYVFTGRSTDELAAA CEEEECCCCEEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHH GVHAGTRVCVDRSKRSVVEIGDYVGAYFLDDRAAVTALLNAARMLRERGQRPADDVYLVF CCCCCCCEECCCCCCHHHHHHHHHCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE TANEEIGGVGGAYASATLPGDLTLALEVGPTEREYTTSVAGGPIVGYSDALCVYDKSVAD ECCCCCCCCCCCHHCCCCCCCEEEEEEECCCCCHHHHCCCCCCEECCCCCEEEECHHHHH RLLKIATDRGLTPQPAALGAFESDASHAKASGLTARAGLLCLPTLSTHGYEVVARSAIDD HHHHHHHCCCCCCCCHHCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH MAAIVVDFVLQPGRPNG HHHHHHHHHHCCCCCCC >Mature Secondary Structure AHRDRDSTDELLQELLWTYGPCGQEDAVRAVIARELEPVVDDLWTDDAGNLIGYVAADA CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC SRGDAGAPDHRHRTAAIPGTATRVMAHMDELSMIVKRVEPDGTLHLTQLGTMYPGNFGLG CCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC PVAVLGDNETLTAVLTLGSEHTTKESSRIWETKPDQGDRSLDWHHVYVFTGRSTDELAAA CEEEECCCCEEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHH GVHAGTRVCVDRSKRSVVEIGDYVGAYFLDDRAAVTALLNAARMLRERGQRPADDVYLVF CCCCCCCEECCCCCCHHHHHHHHHCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE TANEEIGGVGGAYASATLPGDLTLALEVGPTEREYTTSVAGGPIVGYSDALCVYDKSVAD ECCCCCCCCCCCHHCCCCCCCEEEEEEECCCCCHHHHCCCCCCEECCCCCEEEECHHHHH RLLKIATDRGLTPQPAALGAFESDASHAKASGLTARAGLLCLPTLSTHGYEVVARSAIDD HHHHHHHCCCCCCCCHHCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH MAAIVVDFVLQPGRPNG HHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]