| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
Click here to switch to the map view.
The map label for this gene is murI [H]
Identifier: 39998014
GI number: 39998014
Start: 3223038
End: 3223856
Strand: Reverse
Name: murI [H]
Synonym: GSU2923
Alternate gene names: 39998014
Gene position: 3223856-3223038 (Counterclockwise)
Preceding gene: 39998021
Following gene: 39998013
Centisome position: 84.52
GC content: 63.61
Gene sequence:
>819_bases GTGCCCTGGAAAGCCATAGGTATTTTCGACTCGGGGGTCGGAGGACTGACCGTCCTCAAGGAGATCATCAAGGTCCTCCC CCAGGAGGATACCATCTATTTGGGCGATACCGCCCGGGTCCCCTACGGGACCAAATCCCCTGAAACCGTCACCCGCTATA GCCTCGAAATCGCATCGTTCCTGGTGAAGCGCGACATCAAGCTCCTGGTGGTGGCCTGCAACACCGCTTCGGCCGCTTCC CTCGAAGCCCTCACCGAGCGGCTTCCCATCCCGGTAGTCGGCGTCATCGAGCCGGGTGCCCGCCGGGCCGTGGCCACCAC GCGAACCGGCAAGGTCGGGGTTATCGGCACCGAGGGGACTATCCGGAGCAGTGCTTACGCCAAGGCCATCAAGCGACTTA ATCCCGAGGTTGAGGTGATCACCCGTGCCTGTCCGCTCTTCGTTCCCCTGGCCGAAGAGGGGTGGACCGACAACGAGGTG GCGCGCCTGACGGCCCGCACCTACCTGGCCGGTCTGCGGGAGCAGGGGGTCGACACCATCGTACTCGGCTGTACCCACTA CCCCCTCCTCAAGAGGGTCATCGGTGAAACCGTTGGTGAAGACGTCAGGCTCGTGGATTCGGCCGAAGAGACGGCGCGCA CCGTGGCCGACATCCTGAGAGGGCGTGACCTGCTCCGGCCGGACGGTGAGCAGGGCAATCACCACTTCTTCGTCACTGAT GTGCCTGCCGGCTTCATTCGGGTCGGCAACCGCTTCATCGGCGGCAGGCTCGGTGATGTCTACCAGGTGAGTCTCGATGC GGAAAAGGAGCGGCCATGA
Upstream 100 bases:
>100_bases AGCGACGCAACAACTGAAAGCGCCGACCGTTTTCCCGGCAGGGATGCCCGTTGCCCACGGGCCGGCGATATCGGCGAGCG TCCGCGTGCGGAGAAGAATC
Downstream 100 bases:
>100_bases AGCGTTCCACCCCCCGTCGCCGGAGCCTTGTTCTGCTGGCGGCTTTCACCGCAGCGGCGCTGGTCATCGGTCTTCTCATG TTCGACAAATATCGTCAGCG
Product: glutamate racemase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MPWKAIGIFDSGVGGLTVLKEIIKVLPQEDTIYLGDTARVPYGTKSPETVTRYSLEIASFLVKRDIKLLVVACNTASAAS LEALTERLPIPVVGVIEPGARRAVATTRTGKVGVIGTEGTIRSSAYAKAIKRLNPEVEVITRACPLFVPLAEEGWTDNEV ARLTARTYLAGLREQGVDTIVLGCTHYPLLKRVIGETVGEDVRLVDSAEETARTVADILRGRDLLRPDGEQGNHHFFVTD VPAGFIRVGNRFIGGRLGDVYQVSLDAEKERP
Sequences:
>Translated_272_residues MPWKAIGIFDSGVGGLTVLKEIIKVLPQEDTIYLGDTARVPYGTKSPETVTRYSLEIASFLVKRDIKLLVVACNTASAAS LEALTERLPIPVVGVIEPGARRAVATTRTGKVGVIGTEGTIRSSAYAKAIKRLNPEVEVITRACPLFVPLAEEGWTDNEV ARLTARTYLAGLREQGVDTIVLGCTHYPLLKRVIGETVGEDVRLVDSAEETARTVADILRGRDLLRPDGEQGNHHFFVTD VPAGFIRVGNRFIGGRLGDVYQVSLDAEKERP >Mature_271_residues PWKAIGIFDSGVGGLTVLKEIIKVLPQEDTIYLGDTARVPYGTKSPETVTRYSLEIASFLVKRDIKLLVVACNTASAASL EALTERLPIPVVGVIEPGARRAVATTRTGKVGVIGTEGTIRSSAYAKAIKRLNPEVEVITRACPLFVPLAEEGWTDNEVA RLTARTYLAGLREQGVDTIVLGCTHYPLLKRVIGETVGEDVRLVDSAEETARTVADILRGRDLLRPDGEQGNHHFFVTDV PAGFIRVGNRFIGGRLGDVYQVSLDAEKERP
Specific function: Provides the (R)-glutamate required for cell wall biosynthesis [H]
COG id: COG0796
COG function: function code M; Glutamate racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate/glutamate racemases family [H]
Homologues:
Organism=Escherichia coli, GI87082355, Length=235, Percent_Identity=37.0212765957447, Blast_Score=117, Evalue=9e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015942 - InterPro: IPR001920 - InterPro: IPR018187 - InterPro: IPR004391 [H]
Pfam domain/function: PF01177 Asp_Glu_race [H]
EC number: =5.1.1.3 [H]
Molecular weight: Translated: 29521; Mature: 29390
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: PS00923 ASP_GLU_RACEMASE_1 ; PS00924 ASP_GLU_RACEMASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPWKAIGIFDSGVGGLTVLKEIIKVLPQEDTIYLGDTARVPYGTKSPETVTRYSLEIASF CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH LVKRDIKLLVVACNTASAASLEALTERLPIPVVGVIEPGARRAVATTRTGKVGVIGTEGT HHHCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCEEEEECCCC IRSSAYAKAIKRLNPEVEVITRACPLFVPLAEEGWTDNEVARLTARTYLAGLREQGVDTI CHHHHHHHHHHHCCCHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VLGCTHYPLLKRVIGETVGEDVRLVDSAEETARTVADILRGRDLLRPDGEQGNHHFFVTD EEECCCHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE VPAGFIRVGNRFIGGRLGDVYQVSLDAEKERP CCHHHHHHCCCCCCCCCCCEEEEEECCCCCCC >Mature Secondary Structure PWKAIGIFDSGVGGLTVLKEIIKVLPQEDTIYLGDTARVPYGTKSPETVTRYSLEIASF CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH LVKRDIKLLVVACNTASAASLEALTERLPIPVVGVIEPGARRAVATTRTGKVGVIGTEGT HHHCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCEEEEECCCC IRSSAYAKAIKRLNPEVEVITRACPLFVPLAEEGWTDNEVARLTARTYLAGLREQGVDTI CHHHHHHHHHHHCCCHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VLGCTHYPLLKRVIGETVGEDVRLVDSAEETARTVADILRGRDLLRPDGEQGNHHFFVTD EEECCCHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE VPAGFIRVGNRFIGGRLGDVYQVSLDAEKERP CCHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA