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The map label for this gene is ccsA [H]

Identifier: 39997981

GI number: 39997981

Start: 3175814

End: 3176641

Strand: Reverse

Name: ccsA [H]

Synonym: GSU2890

Alternate gene names: 39997981

Gene position: 3176641-3175814 (Counterclockwise)

Preceding gene: 39997982

Following gene: 39997980

Centisome position: 83.29

GC content: 60.51

Gene sequence:

>828_bases
ATGGATTCATCCTTTGCACACATCACCATAATTCACTGGGTAGCGGTGGTTGTCTACGTCATCGCCACCATCTTCAACGT
ATCGGGCCTCATGTTCCGCAAGGAGCGCGCCGTTGCCGTCAGCGAGGCCCTGGTGCTCGGGGGGCTCCTGGTGCACGGGA
TCGGCATCCTCTGGTGGTGGAAGATCGTCGGCCACGGCCCCTACATCGGCCGGTTCGAGGTCCTCTCCTCCCACGCCTGG
GCCGTGCTGGCCCTGTTCATGGCATCCTCACGCTTTTTCCCCCGCATCAAGGCGGCGAGCATCCTGGTTTTCCCGGTCAC
CTTCCTCATGATCGCCGTGGGCCTGTTCATCGAGCCCCAGGCCAAGATGCTCCCCCCCACGCTGAGGAGCGTCTGGCTCG
TCCTGCACGTGATCTTCTACAAGATATCGCTCTTCACCCTGCTGGTGGCCCTGGCGTTCTCCCTCTTCTACCTTCTCCGG
AAGCGGACCGGGATCTCCTGGCTCCAGCGGCTCCCCGAACTGGAGATCCTCGATATCCTGTCATTTCGTTTTGCCGGCTT
CAGCTTCACCTTCTGGGGTATCGCCATGGTGGCCGGAAGCATCTGGGCATACCAGTCGTGGGGGCGTTTCTGGGGCTGGG
ATCCGGTGGAGACCTGGTCCCTCATGACATGGATCGCCTTCGGCATTTACCTCCACCTGCGCCGTTTCTTCGGCTGGAAC
GGTGAGCGGGCGGCCTACCTCTACCTGATCTGCTTCGTTCTCTCGGTGATTTCGCTCCTCTTTACGCCGCTCATCGGTTC
GTCGATCCATTCGGAGTATTTCAAGTAG

Upstream 100 bases:

>100_bases
CGGACGAGGCAGCCGGCGGGGACCGGGTACCGGGCGGGGGGCATCGGGGATGAGCCGCGTACGGCGCGGCCACACGTTCA
CACAGGGGTAAGGAGTACTC

Downstream 100 bases:

>100_bases
AGATCCGGCGACCCTGCCTTCAGAAAGAGGCCTTGCATGAACGTGAAAAATGCAGCAGTGATTCTCAACGGCTTTGTCCA
TGACTTCGCGGCCGGCATCT

Product: CcmF/CcyK/CcsA family cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MDSSFAHITIIHWVAVVVYVIATIFNVSGLMFRKERAVAVSEALVLGGLLVHGIGILWWWKIVGHGPYIGRFEVLSSHAW
AVLALFMASSRFFPRIKAASILVFPVTFLMIAVGLFIEPQAKMLPPTLRSVWLVLHVIFYKISLFTLLVALAFSLFYLLR
KRTGISWLQRLPELEILDILSFRFAGFSFTFWGIAMVAGSIWAYQSWGRFWGWDPVETWSLMTWIAFGIYLHLRRFFGWN
GERAAYLYLICFVLSVISLLFTPLIGSSIHSEYFK

Sequences:

>Translated_275_residues
MDSSFAHITIIHWVAVVVYVIATIFNVSGLMFRKERAVAVSEALVLGGLLVHGIGILWWWKIVGHGPYIGRFEVLSSHAW
AVLALFMASSRFFPRIKAASILVFPVTFLMIAVGLFIEPQAKMLPPTLRSVWLVLHVIFYKISLFTLLVALAFSLFYLLR
KRTGISWLQRLPELEILDILSFRFAGFSFTFWGIAMVAGSIWAYQSWGRFWGWDPVETWSLMTWIAFGIYLHLRRFFGWN
GERAAYLYLICFVLSVISLLFTPLIGSSIHSEYFK
>Mature_275_residues
MDSSFAHITIIHWVAVVVYVIATIFNVSGLMFRKERAVAVSEALVLGGLLVHGIGILWWWKIVGHGPYIGRFEVLSSHAW
AVLALFMASSRFFPRIKAASILVFPVTFLMIAVGLFIEPQAKMLPPTLRSVWLVLHVIFYKISLFTLLVALAFSLFYLLR
KRTGISWLQRLPELEILDILSFRFAGFSFTFWGIAMVAGSIWAYQSWGRFWGWDPVETWSLMTWIAFGIYLHLRRFFGWN
GERAAYLYLICFVLSVISLLFTPLIGSSIHSEYFK

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003557
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 31544; Mature: 31544

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSSFAHITIIHWVAVVVYVIATIFNVSGLMFRKERAVAVSEALVLGGLLVHGIGILWWW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIVGHGPYIGRFEVLSSHAWAVLALFMASSRFFPRIKAASILVFPVTFLMIAVGLFIEPQ
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
AKMLPPTLRSVWLVLHVIFYKISLFTLLVALAFSLFYLLRKRTGISWLQRLPELEILDIL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHH
SFRFAGFSFTFWGIAMVAGSIWAYQSWGRFWGWDPVETWSLMTWIAFGIYLHLRRFFGWN
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GERAAYLYLICFVLSVISLLFTPLIGSSIHSEYFK
CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
>Mature Secondary Structure
MDSSFAHITIIHWVAVVVYVIATIFNVSGLMFRKERAVAVSEALVLGGLLVHGIGILWWW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIVGHGPYIGRFEVLSSHAWAVLALFMASSRFFPRIKAASILVFPVTFLMIAVGLFIEPQ
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
AKMLPPTLRSVWLVLHVIFYKISLFTLLVALAFSLFYLLRKRTGISWLQRLPELEILDIL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHH
SFRFAGFSFTFWGIAMVAGSIWAYQSWGRFWGWDPVETWSLMTWIAFGIYLHLRRFFGWN
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GERAAYLYLICFVLSVISLLFTPLIGSSIHSEYFK
CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA