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The map label for this gene is secY [H]

Identifier: 39997929

GI number: 39997929

Start: 3119208

End: 3120515

Strand: Reverse

Name: secY [H]

Synonym: GSU2837

Alternate gene names: 39997929

Gene position: 3120515-3119208 (Counterclockwise)

Preceding gene: 39997930

Following gene: 39997928

Centisome position: 81.81

GC content: 52.6

Gene sequence:

>1308_bases
TTGATCGATGCATTCCAGAACATCTTCCGAATACCTGAACTGAAGAAACGAGTGCTTTTTTCGCTGGGAATGCTGGCAGT
TTACCGGGTCGGTTGTCATATCCCGACCCCAGGCATCGACAGCAACGCACTTGCGCACTTCTTCGCTCAAGCCCGTGGTA
CACTCCTCGGGCTTTTCGACATGTTTTCGGGGGGCGCGCTGGAGAAGCTGACCGTCTTCGCTCTGGGCATCATGCCCTAT
ATTTCATCGTCCATCATTTTCCAGTTGTTGACGGTGGTTGTGCCTTCCATTGAGAAATTGTCCAAGGAAGGGGAGTCCGG
CAGGAAAAAGATCATACAGTACACACGCTACGGTACGATAGTGCTCAGCGTGGTTCAGGCACTCGGTATCAGCATTGGCC
TTGAGAGCATGCGCGGACCGGCAGGTGAACTTGTCGTTCCTAATCCCGGATGGGGCTTCAGGCTGATGACAGTCATCACA
TTGACCGCTGGGACGGCATTCATTATGTGGCTCGGTGAGCAGATGTCCGAGAAGGGGATCGGCAACGGAATCTCTCTTAT
CATCTTTGCTGGAATTGTCGCACGGATACCGACGGCCCTTCTCAATACTGGCCGCCTGATCAAGACGGGGCAGCTGTCAC
TGTTTGTGATCCTGCTTGTTGTGGCACTGATGTTTCTGGTAATTGCTGCAATCGTGTACGTTGAGCGAGGGCAGCGACGG
TTGCCGATTCACTACGCGAAACGGGTTGTCGGGCTGAAGACATATGGTGGGCAGACCTCGCACTTACCACTCAAGGTGAA
TATGGCCGGTGTTATCCCGCCGATCTTTGCATCGTCCATCATCATGTTCCCGGCAACGGTCGCAAACTTTATAAACGTAC
CATGGGTCCAGACGGTTGCCAAAAGTCTGACTCCCGGCAACCTAGCCTACGAAATCTTTTATGTTGCCTTTATTATCTTC
TTCTGTTATTTCTATACGGCTGTTTCGTTTAATCCCGTTGATGTTGCGGAGAACGTTAAAAAGCACGGCGGATATATACC
CGGGATTCGTCCGGGCAAGGAAACGTCCGACTATCTTGATCGGGTGCTGACAAAGCTTACCTTTGCCGGAGCCTTGTATA
TCTCGGCTGTATGCGTTCTCCCGTCTGTGCTTGTCGGCAAGTTCAATTTGCCGTTCTACTTCGGCGGCACTGCTCTGCTC
ATTGCTGTAGGGGTTGGCATGGACACCGCGGCACAGATTGAATCCCATCTCATCACCCGAAGCTATGAGGGTTTTATGAA
GGGTGTGCGGGTGCGGGGCGGGCGGTAA

Upstream 100 bases:

>100_bases
GCGATCTGACCAAGCCACTTACCGTCAAAGCGCATAAGTTCAGCGCAAAGGCTAAAGAAAAAATCGCGGCGGCAGGTGGT
ACTGTCGAGGAGATTTCACT

Downstream 100 bases:

>100_bases
TACTGGCGTGGAGTGTGCTGCATGAATCTGGTGTTTCTCGGTCCGCCTGGTGCCGGCAAGGGGACGCAGGCAAACCTGTT
AACTCGTACGTATGAAGTCC

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MIDAFQNIFRIPELKKRVLFSLGMLAVYRVGCHIPTPGIDSNALAHFFAQARGTLLGLFDMFSGGALEKLTVFALGIMPY
ISSSIIFQLLTVVVPSIEKLSKEGESGRKKIIQYTRYGTIVLSVVQALGISIGLESMRGPAGELVVPNPGWGFRLMTVIT
LTAGTAFIMWLGEQMSEKGIGNGISLIIFAGIVARIPTALLNTGRLIKTGQLSLFVILLVVALMFLVIAAIVYVERGQRR
LPIHYAKRVVGLKTYGGQTSHLPLKVNMAGVIPPIFASSIIMFPATVANFINVPWVQTVAKSLTPGNLAYEIFYVAFIIF
FCYFYTAVSFNPVDVAENVKKHGGYIPGIRPGKETSDYLDRVLTKLTFAGALYISAVCVLPSVLVGKFNLPFYFGGTALL
IAVGVGMDTAAQIESHLITRSYEGFMKGVRVRGGR

Sequences:

>Translated_435_residues
MIDAFQNIFRIPELKKRVLFSLGMLAVYRVGCHIPTPGIDSNALAHFFAQARGTLLGLFDMFSGGALEKLTVFALGIMPY
ISSSIIFQLLTVVVPSIEKLSKEGESGRKKIIQYTRYGTIVLSVVQALGISIGLESMRGPAGELVVPNPGWGFRLMTVIT
LTAGTAFIMWLGEQMSEKGIGNGISLIIFAGIVARIPTALLNTGRLIKTGQLSLFVILLVVALMFLVIAAIVYVERGQRR
LPIHYAKRVVGLKTYGGQTSHLPLKVNMAGVIPPIFASSIIMFPATVANFINVPWVQTVAKSLTPGNLAYEIFYVAFIIF
FCYFYTAVSFNPVDVAENVKKHGGYIPGIRPGKETSDYLDRVLTKLTFAGALYISAVCVLPSVLVGKFNLPFYFGGTALL
IAVGVGMDTAAQIESHLITRSYEGFMKGVRVRGGR
>Mature_435_residues
MIDAFQNIFRIPELKKRVLFSLGMLAVYRVGCHIPTPGIDSNALAHFFAQARGTLLGLFDMFSGGALEKLTVFALGIMPY
ISSSIIFQLLTVVVPSIEKLSKEGESGRKKIIQYTRYGTIVLSVVQALGISIGLESMRGPAGELVVPNPGWGFRLMTVIT
LTAGTAFIMWLGEQMSEKGIGNGISLIIFAGIVARIPTALLNTGRLIKTGQLSLFVILLVVALMFLVIAAIVYVERGQRR
LPIHYAKRVVGLKTYGGQTSHLPLKVNMAGVIPPIFASSIIMFPATVANFINVPWVQTVAKSLTPGNLAYEIFYVAFIIF
FCYFYTAVSFNPVDVAENVKKHGGYIPGIRPGKETSDYLDRVLTKLTFAGALYISAVCVLPSVLVGKFNLPFYFGGTALL
IAVGVGMDTAAQIESHLITRSYEGFMKGVRVRGGR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=425, Percent_Identity=52.9411764705882, Blast_Score=421, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47261; Mature: 47261

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDAFQNIFRIPELKKRVLFSLGMLAVYRVGCHIPTPGIDSNALAHFFAQARGTLLGLFD
CCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
MFSGGALEKLTVFALGIMPYISSSIIFQLLTVVVPSIEKLSKEGESGRKKIIQYTRYGTI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VLSVVQALGISIGLESMRGPAGELVVPNPGWGFRLMTVITLTAGTAFIMWLGEQMSEKGI
HHHHHHHHHHHHCHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GNGISLIIFAGIVARIPTALLNTGRLIKTGQLSLFVILLVVALMFLVIAAIVYVERGQRR
CCCHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPIHYAKRVVGLKTYGGQTSHLPLKVNMAGVIPPIFASSIIMFPATVANFINVPWVQTVA
CCHHHHHHHHHHEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH
KSLTPGNLAYEIFYVAFIIFFCYFYTAVSFNPVDVAENVKKHGGYIPGIRPGKETSDYLD
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHH
RVLTKLTFAGALYISAVCVLPSVLVGKFNLPFYFGGTALLIAVGVGMDTAAQIESHLITR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHH
SYEGFMKGVRVRGGR
HHHHHHHCHHCCCCC
>Mature Secondary Structure
MIDAFQNIFRIPELKKRVLFSLGMLAVYRVGCHIPTPGIDSNALAHFFAQARGTLLGLFD
CCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
MFSGGALEKLTVFALGIMPYISSSIIFQLLTVVVPSIEKLSKEGESGRKKIIQYTRYGTI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VLSVVQALGISIGLESMRGPAGELVVPNPGWGFRLMTVITLTAGTAFIMWLGEQMSEKGI
HHHHHHHHHHHHCHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GNGISLIIFAGIVARIPTALLNTGRLIKTGQLSLFVILLVVALMFLVIAAIVYVERGQRR
CCCHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPIHYAKRVVGLKTYGGQTSHLPLKVNMAGVIPPIFASSIIMFPATVANFINVPWVQTVA
CCHHHHHHHHHHEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH
KSLTPGNLAYEIFYVAFIIFFCYFYTAVSFNPVDVAENVKKHGGYIPGIRPGKETSDYLD
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHH
RVLTKLTFAGALYISAVCVLPSVLVGKFNLPFYFGGTALLIAVGVGMDTAAQIESHLITR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHH
SYEGFMKGVRVRGGR
HHHHHHHCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]