Click here to switch to the map view.

The map label for this gene is 39997920

Identifier: 39997920

GI number: 39997920

Start: 3111708

End: 3112568

Strand: Reverse

Name: 39997920

Synonym: GSU2828

Alternate gene names: NA

Gene position: 3112568-3111708 (Counterclockwise)

Preceding gene: 39997921

Following gene: 39997919

Centisome position: 81.61

GC content: 61.44

Gene sequence:

>861_bases
ATGACTGAATTGACGGAGTTCGTAGAACGACAGTCGCGTCAAGTGCTGGTGGCGCTTGGCTACGTGCTCCTCATTCTTTT
CGGCTTGGTCGACCACTTGGCTGACGGTCCGGGATTTGAACCGTTCTATGCCATCCCCGTGGCTCTCGTGACCTGGTATG
GTGCGCGCACGGCCGGTTTTGCGGCCGCCTGCGCCGGCGGAATCGTCTGGGGGCTGGCAAACGGCGTGTTCATGGGTGAA
GAGTTGAAGCCCGGCCCTACGCTGTGGACGCTTCTGTGGCAATTCGGACTGCTGCTCGCAATCGTTTTTCTGGTAGATAC
GGTCAAAAAATCCCGCCGGTTCATGGCGGCAACGGCGCGGACCGATCTGCTGACCGGCCTTGCCACGCGCACCTGCTTCG
AAGAGCTCGCCCGGAGCGAAATCAGCAGGTCGAAACGGTACGGCCGACCTTTTACATTCATCGTTATCAGATTCAGCCCG
CCTAATGGCGAACAGGCGGTCGGGCCAGGCTCTTTGCGGGATATCATGCCTGCGGCAGCTGTAGCCATCAGGCCGCAGCT
TCGGGAAACCGATCTGTTCGCCCGGCTTGACGAGTTCACCCTGGCGGCGCTGCTGCCCGAGGCTACCCACGATCCGTCAA
AGGTTGTGGTTCAGAAGATACTGGGCCTCCTTGCAGCGGTGCAGCGTGACCGGCGGTGGCAGCTGCGCTTTGGCGTCGGT
GCGGTAACGTACGAGGCAGCGCCGGAGTCGACGGACGAGATGGTGAGACGCGGGGTGAAACTTGCCGATTCCGCAAGTCG
TGCCGGTGGCGGAGCCGTCAAGTATGAAACCTGTCGGGACCCCGGCGCAGTGAACGGATGA

Upstream 100 bases:

>100_bases
ACGTCCTGATTTCTGGTAAGAATATCCAGCCGGGACAGTCGGAATAACCAGGGGCGCCCAAGGAGACTCCGGGGGGGCAG
CCGCGGAGACGGGTGATCGT

Downstream 100 bases:

>100_bases
TTGGCGGCCGGGTGGCGATGCGTCTCCTGAGGGCAGCGGTCACTCCGCCGCTTTCGACAATGAGTGCCGGACGTATTCCG
CGGGAACGCGATGAAACCAT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: GGDEF Domain-Containing Protein

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MTELTEFVERQSRQVLVALGYVLLILFGLVDHLADGPGFEPFYAIPVALVTWYGARTAGFAAACAGGIVWGLANGVFMGE
ELKPGPTLWTLLWQFGLLLAIVFLVDTVKKSRRFMAATARTDLLTGLATRTCFEELARSEISRSKRYGRPFTFIVIRFSP
PNGEQAVGPGSLRDIMPAAAVAIRPQLRETDLFARLDEFTLAALLPEATHDPSKVVVQKILGLLAAVQRDRRWQLRFGVG
AVTYEAAPESTDEMVRRGVKLADSASRAGGGAVKYETCRDPGAVNG

Sequences:

>Translated_286_residues
MTELTEFVERQSRQVLVALGYVLLILFGLVDHLADGPGFEPFYAIPVALVTWYGARTAGFAAACAGGIVWGLANGVFMGE
ELKPGPTLWTLLWQFGLLLAIVFLVDTVKKSRRFMAATARTDLLTGLATRTCFEELARSEISRSKRYGRPFTFIVIRFSP
PNGEQAVGPGSLRDIMPAAAVAIRPQLRETDLFARLDEFTLAALLPEATHDPSKVVVQKILGLLAAVQRDRRWQLRFGVG
AVTYEAAPESTDEMVRRGVKLADSASRAGGGAVKYETCRDPGAVNG
>Mature_285_residues
TELTEFVERQSRQVLVALGYVLLILFGLVDHLADGPGFEPFYAIPVALVTWYGARTAGFAAACAGGIVWGLANGVFMGEE
LKPGPTLWTLLWQFGLLLAIVFLVDTVKKSRRFMAATARTDLLTGLATRTCFEELARSEISRSKRYGRPFTFIVIRFSPP
NGEQAVGPGSLRDIMPAAAVAIRPQLRETDLFARLDEFTLAALLPEATHDPSKVVVQKILGLLAAVQRDRRWQLRFGVGA
VTYEAAPESTDEMVRRGVKLADSASRAGGGAVKYETCRDPGAVNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31132; Mature: 31001

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELTEFVERQSRQVLVALGYVLLILFGLVDHLADGPGFEPFYAIPVALVTWYGARTAGF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH
AAACAGGIVWGLANGVFMGEELKPGPTLWTLLWQFGLLLAIVFLVDTVKKSRRFMAATAR
HHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TDLLTGLATRTCFEELARSEISRSKRYGRPFTFIVIRFSPPNGEQAVGPGSLRDIMPAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
VAIRPQLRETDLFARLDEFTLAALLPEATHDPSKVVVQKILGLLAAVQRDRRWQLRFGVG
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC
AVTYEAAPESTDEMVRRGVKLADSASRAGGGAVKYETCRDPGAVNG
EEEECCCCCCHHHHHHCCCHHHHHHCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
TELTEFVERQSRQVLVALGYVLLILFGLVDHLADGPGFEPFYAIPVALVTWYGARTAGF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH
AAACAGGIVWGLANGVFMGEELKPGPTLWTLLWQFGLLLAIVFLVDTVKKSRRFMAATAR
HHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TDLLTGLATRTCFEELARSEISRSKRYGRPFTFIVIRFSPPNGEQAVGPGSLRDIMPAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
VAIRPQLRETDLFARLDEFTLAALLPEATHDPSKVVVQKILGLLAAVQRDRRWQLRFGVG
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC
AVTYEAAPESTDEMVRRGVKLADSASRAGGGAVKYETCRDPGAVNG
EEEECCCCCCHHHHHHCCCHHHHHHCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA