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The map label for this gene is pdtaR [H]

Identifier: 39997915

GI number: 39997915

Start: 3105261

End: 3105836

Strand: Reverse

Name: pdtaR [H]

Synonym: GSU2822

Alternate gene names: 39997915

Gene position: 3105836-3105261 (Counterclockwise)

Preceding gene: 39997919

Following gene: 39997914

Centisome position: 81.43

GC content: 58.51

Gene sequence:

>576_bases
GTGATTTTAGTGCGAAGTGTCCTTATATGCGACGATGAACCGATTATCAGGATGAGCTTAAAAAATAAGCTCACGGAGCT
TGGTTTCGATGAAATCGTGGAGTGCGGGGATGGCGAGCAGGCCGTTCGGATGGCGTTTGCCAAGCTTCCCGACGTCATCA
TTCTCGACGTGTCGATGCCGAAGAAAGACGGCATCGCGGCGGCCCGCGAGATCCGGCAGCGTCTGAAGGTGCCCATTATC
CTGCTGACGGCCTGCTATGATGCAGACACGGTTGCGCGAGCACGGGAAAGCGGCATCGGCGGCTTCCTTGCCAAGCCGTT
CCGGGAGCAGGACCTCTGGCCGGCCATCGAGCTGGCCTGTGCCCATGCCGAAGAGGTGGAGCTCCTCAAGGAGCAGGTTG
AGGACCTGAAGGAAACCCTGGAGAGTCGCAAGATCGTTGAAAAGGCCAAGGGTATCCTGATGCAGAACCAGGGGCTCACG
GAGCCCGAAGCGTTCCGCAAGATGCAGAAGCTGGCCATGGACAAGCGCAAGAGCATGCGCCAGATTGCCGAGGCGATTCT
GCTGACCGAAGCGTAG

Upstream 100 bases:

>100_bases
AGACGTAATGACGGGGCCGGGCGAGAATAGGATTGGAACACTTTATGCTGAATAGAGGGGGAACAGAGGCGGGTTTTGGT
GGATAAAACGAGATAAGGTG

Downstream 100 bases:

>100_bases
CGGCGGGAACGGATGGTGGTAAGGGGGCGCCCGGTGGGCGCCCTTTCTATTTTTTAGGCAGTTGAAGGACTGCTGCGGAC
GGATGGATGAAAAACACAAT

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MILVRSVLICDDEPIIRMSLKNKLTELGFDEIVECGDGEQAVRMAFAKLPDVIILDVSMPKKDGIAAAREIRQRLKVPII
LLTACYDADTVARARESGIGGFLAKPFREQDLWPAIELACAHAEEVELLKEQVEDLKETLESRKIVEKAKGILMQNQGLT
EPEAFRKMQKLAMDKRKSMRQIAEAILLTEA

Sequences:

>Translated_191_residues
MILVRSVLICDDEPIIRMSLKNKLTELGFDEIVECGDGEQAVRMAFAKLPDVIILDVSMPKKDGIAAAREIRQRLKVPII
LLTACYDADTVARARESGIGGFLAKPFREQDLWPAIELACAHAEEVELLKEQVEDLKETLESRKIVEKAKGILMQNQGLT
EPEAFRKMQKLAMDKRKSMRQIAEAILLTEA
>Mature_191_residues
MILVRSVLICDDEPIIRMSLKNKLTELGFDEIVECGDGEQAVRMAFAKLPDVIILDVSMPKKDGIAAAREIRQRLKVPII
LLTACYDADTVARARESGIGGFLAKPFREQDLWPAIELACAHAEEVELLKEQVEDLKETLESRKIVEKAKGILMQNQGLT
EPEAFRKMQKLAMDKRKSMRQIAEAILLTEA

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=144, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790299, Length=120, Percent_Identity=31.6666666666667, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21449; Mature: 21449

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILVRSVLICDDEPIIRMSLKNKLTELGFDEIVECGDGEQAVRMAFAKLPDVIILDVSMP
CCHHHEEEEECCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCC
KKDGIAAAREIRQRLKVPIILLTACYDADTVARARESGIGGFLAKPFREQDLWPAIELAC
CCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHH
AHAEEVELLKEQVEDLKETLESRKIVEKAKGILMQNQGLTEPEAFRKMQKLAMDKRKSMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH
QIAEAILLTEA
HHHHHHHHCCC
>Mature Secondary Structure
MILVRSVLICDDEPIIRMSLKNKLTELGFDEIVECGDGEQAVRMAFAKLPDVIILDVSMP
CCHHHEEEEECCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCC
KKDGIAAAREIRQRLKVPIILLTACYDADTVARARESGIGGFLAKPFREQDLWPAIELAC
CCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHH
AHAEEVELLKEQVEDLKETLESRKIVEKAKGILMQNQGLTEPEAFRKMQKLAMDKRKSMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH
QIAEAILLTEA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]