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The map label for this gene is yvkB [H]

Identifier: 39997835

GI number: 39997835

Start: 3017725

End: 3018372

Strand: Reverse

Name: yvkB [H]

Synonym: GSU2741

Alternate gene names: 39997835

Gene position: 3018372-3017725 (Counterclockwise)

Preceding gene: 39997836

Following gene: 39997833

Centisome position: 79.14

GC content: 59.72

Gene sequence:

>648_bases
ATGGGAGTTGTCAAAGGCGACAAGCCGTTTGACTCATTCAATGCAACCAGGGAGCGGATCCTCGAAACGGCCCTCGGTCT
GTTCTCGACCAAGGGGTACCTGGGAGCCACGACCCGCGAGATCGCCCGACAGGCGGGCATCGCGGAGGTGACGCTCTTCC
GCCATTTTCCCTCCAAAGAAAAACTTCTCGAAGAAGCGATCACCCGTTATTCCATTTTGCCGTCGCTGCGCGCCTTCGTG
CCCCGGGCGCTCGCCATGCCCTACGAGGATGCGCTGGCGGCCATGGCGAACATCCTTTTGGACACGCTGATCCAGCTGAA
GGACTGGCTTCGGATCATGCACGCGGAGGTCCAGCGCTCGCCTGAGAAGCTGCTGGGGGTGTACCACACGTTTTTGGACG
AGCTGTTCGAAGTGATCGCGTCCTATTTCCGTGAGCTGCAGCAGCGGGGCAGCATCGGCAGTTTCGACCCCGAGCTTGGT
GCGCGGGTGTTTCACGCCATGTTCTACTGTTTTTTCAATATCGAAGAGGTACTGCTGCGCAAGCAGTACCGTCCCACGGA
CCGAGAGAAGGCCGTGCGGGAATTCGTCCGGATGTTTGTCCACGGCACGGGCGGTATCGGCCGTACGGACTATGCCAGGG
CATCGTAA

Upstream 100 bases:

>100_bases
CCGCCTTTTGCTCATTAGTGCAGAAACCTTGATCTGAAGATTTTTTTTTGGCCCGGAAATGTAAGCAAGCGCTTACATAG
TCAGCCCACCGGGAGGGGCA

Downstream 100 bases:

>100_bases
CCGCGCTGATCAGACGCGCCAAAAGTGATCAACGGTTGTGATAGGGACGGGAGACGGCCGAAGGAGGTGATGTCAGCAGC
CGCCGTGATCCTGCCGGAAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MGVVKGDKPFDSFNATRERILETALGLFSTKGYLGATTREIARQAGIAEVTLFRHFPSKEKLLEEAITRYSILPSLRAFV
PRALAMPYEDALAAMANILLDTLIQLKDWLRIMHAEVQRSPEKLLGVYHTFLDELFEVIASYFRELQQRGSIGSFDPELG
ARVFHAMFYCFFNIEEVLLRKQYRPTDREKAVREFVRMFVHGTGGIGRTDYARAS

Sequences:

>Translated_215_residues
MGVVKGDKPFDSFNATRERILETALGLFSTKGYLGATTREIARQAGIAEVTLFRHFPSKEKLLEEAITRYSILPSLRAFV
PRALAMPYEDALAAMANILLDTLIQLKDWLRIMHAEVQRSPEKLLGVYHTFLDELFEVIASYFRELQQRGSIGSFDPELG
ARVFHAMFYCFFNIEEVLLRKQYRPTDREKAVREFVRMFVHGTGGIGRTDYARAS
>Mature_214_residues
GVVKGDKPFDSFNATRERILETALGLFSTKGYLGATTREIARQAGIAEVTLFRHFPSKEKLLEEAITRYSILPSLRAFVP
RALAMPYEDALAAMANILLDTLIQLKDWLRIMHAEVQRSPEKLLGVYHTFLDELFEVIASYFRELQQRGSIGSFDPELGA
RVFHAMFYCFFNIEEVLLRKQYRPTDREKAVREFVRMFVHGTGGIGRTDYARAS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24605; Mature: 24474

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVVKGDKPFDSFNATRERILETALGLFSTKGYLGATTREIARQAGIAEVTLFRHFPSKE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCCHH
KLLEEAITRYSILPSLRAFVPRALAMPYEDALAAMANILLDTLIQLKDWLRIMHAEVQRS
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PEKLLGVYHTFLDELFEVIASYFRELQQRGSIGSFDPELGARVFHAMFYCFFNIEEVLLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KQYRPTDREKAVREFVRMFVHGTGGIGRTDYARAS
HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
GVVKGDKPFDSFNATRERILETALGLFSTKGYLGATTREIARQAGIAEVTLFRHFPSKE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCCHH
KLLEEAITRYSILPSLRAFVPRALAMPYEDALAAMANILLDTLIQLKDWLRIMHAEVQRS
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PEKLLGVYHTFLDELFEVIASYFRELQQRGSIGSFDPELGARVFHAMFYCFFNIEEVLLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KQYRPTDREKAVREFVRMFVHGTGGIGRTDYARAS
HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]