Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
---|---|
Accession | NC_002939 |
Length | 3,814,139 |
Click here to switch to the map view.
The map label for this gene is glnM [H]
Identifier: 39997744
GI number: 39997744
Start: 2920249
End: 2921037
Strand: Direct
Name: glnM [H]
Synonym: GSU2650
Alternate gene names: 39997744
Gene position: 2920249-2921037 (Clockwise)
Preceding gene: 39997743
Following gene: 39997745
Centisome position: 76.56
GC content: 63.88
Gene sequence:
>789_bases ATGAACCTCCTCTTCGCACCCAATGACTGCCGGGAGGGAGGCGCCGTCCCCCTCCCGGCCCGCATCGTCGGCATCCTTAT CGCCTTTCTCCTGGTGACGCTCATCTTTGCCTACGCCTTCCATTCCCTCCAGTACCACTGGGGGTGGGAGTCGGTCTACG CCTACCGGCAGAAATTCGTCAACGGCTGGCTCATGACCCTCGCCATCTCGGCGGCGGCGCTGCTTCTCTCGCTCGCGATC GGTCTCTGCACGGCCTTGACCCAGCGGAGCCGGTTGCTGCCGCTACGCTACCTGGGCCGGATCTACGTGGAGACGATCCG GGGAACGCCGCTGCTGGTGCAGATCCTGGTGTTCTTCTATGTGGTGGCCGACGCCTTCGGCGTGGGCGACCGCTACCTGG TGGGAGTGATCACCCTGTCGCTCTTTGCCGGCGCCTACATCTCCGAGATGATCCGGGCCGGCATCGAAAGCGTGGGCGAC TCCCAGATGGAATCGGCCCGGGCCATCGGCCTCACTCGTGCCCAGATCTACCGGTACGTGGTCTTTCCCCAGGCGTTCCG CCAGACCCTCCCCCCCCTGGCGGGACAGTTCGCCTCCATCGTCAAGGACTCGTCGCTCCTTTCCATCATCGCCGTGAGCG AATTCACCCTCAACGCCCAGGAGGTGAACGCCTTCACCTACAGCACCCTGGAAAGCTACCTTCCCCTGGCCATCGGCTAC CTGGCCATCACCCTGCCCATCTCGCTCCTCTCGCGCCGGCTCGAGAAGAAGTTCCGTTATGCAACTTAG
Upstream 100 bases:
>100_bases CCGCAAGAAAGGCGGCTTCGAGACGCTTGGCGACAAGTACCTCAAGGAGCAGAAGGAAGCGTTCAAGAAACTGGGCTATC CCTTCTATCTCTAGGACGCC
Downstream 100 bases:
>100_bases ACTGACGGGGATAACTAAGCGGTTCGGGAGCCAGACCGCCCTGGCCGGCCTGTCGCTGGACATGGCCGAGTTCAAGGCCC TGGCGGTGATCGGCCCCTCC
Product: amino acid ABC transporter permease
Products: ADP; phosphate; L-glutamine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MNLLFAPNDCREGGAVPLPARIVGILIAFLLVTLIFAYAFHSLQYHWGWESVYAYRQKFVNGWLMTLAISAAALLLSLAI GLCTALTQRSRLLPLRYLGRIYVETIRGTPLLVQILVFFYVVADAFGVGDRYLVGVITLSLFAGAYISEMIRAGIESVGD SQMESARAIGLTRAQIYRYVVFPQAFRQTLPPLAGQFASIVKDSSLLSIIAVSEFTLNAQEVNAFTYSTLESYLPLAIGY LAITLPISLLSRRLEKKFRYAT
Sequences:
>Translated_262_residues MNLLFAPNDCREGGAVPLPARIVGILIAFLLVTLIFAYAFHSLQYHWGWESVYAYRQKFVNGWLMTLAISAAALLLSLAI GLCTALTQRSRLLPLRYLGRIYVETIRGTPLLVQILVFFYVVADAFGVGDRYLVGVITLSLFAGAYISEMIRAGIESVGD SQMESARAIGLTRAQIYRYVVFPQAFRQTLPPLAGQFASIVKDSSLLSIIAVSEFTLNAQEVNAFTYSTLESYLPLAIGY LAITLPISLLSRRLEKKFRYAT >Mature_262_residues MNLLFAPNDCREGGAVPLPARIVGILIAFLLVTLIFAYAFHSLQYHWGWESVYAYRQKFVNGWLMTLAISAAALLLSLAI GLCTALTQRSRLLPLRYLGRIYVETIRGTPLLVQILVFFYVVADAFGVGDRYLVGVITLSLFAGAYISEMIRAGIESVGD SQMESARAIGLTRAQIYRYVVFPQAFRQTLPPLAGQFASIVKDSSLLSIIAVSEFTLNAQEVNAFTYSTLESYLPLAIGY LAITLPISLLSRRLEKKFRYAT
Specific function: Part of the ABC transporter complex glnHMPQ involved in glutamine transport. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0765
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787030, Length=213, Percent_Identity=33.8028169014084, Blast_Score=128, Evalue=5e-31, Organism=Escherichia coli, GI1788226, Length=195, Percent_Identity=35.3846153846154, Blast_Score=114, Evalue=9e-27, Organism=Escherichia coli, GI1786873, Length=222, Percent_Identity=28.8288288288288, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1786874, Length=243, Percent_Identity=27.9835390946502, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787087, Length=217, Percent_Identity=28.110599078341, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1788646, Length=220, Percent_Identity=29.0909090909091, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI87082239, Length=204, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1788645, Length=230, Percent_Identity=28.2608695652174, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI48994930, Length=122, Percent_Identity=38.5245901639344, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787086, Length=216, Percent_Identity=24.0740740740741, Blast_Score=64, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 29054; Mature: 29054
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLLFAPNDCREGGAVPLPARIVGILIAFLLVTLIFAYAFHSLQYHWGWESVYAYRQKFV CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH NGWLMTLAISAAALLLSLAIGLCTALTQRSRLLPLRYLGRIYVETIRGTPLLVQILVFFY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH VVADAFGVGDRYLVGVITLSLFAGAYISEMIRAGIESVGDSQMESARAIGLTRAQIYRYV HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH VFPQAFRQTLPPLAGQFASIVKDSSLLSIIAVSEFTLNAQEVNAFTYSTLESYLPLAIGY HHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH LAITLPISLLSRRLEKKFRYAT HHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNLLFAPNDCREGGAVPLPARIVGILIAFLLVTLIFAYAFHSLQYHWGWESVYAYRQKFV CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH NGWLMTLAISAAALLLSLAIGLCTALTQRSRLLPLRYLGRIYVETIRGTPLLVQILVFFY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH VVADAFGVGDRYLVGVITLSLFAGAYISEMIRAGIESVGDSQMESARAIGLTRAQIYRYV HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH VFPQAFRQTLPPLAGQFASIVKDSSLLSIIAVSEFTLNAQEVNAFTYSTLESYLPLAIGY HHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH LAITLPISLLSRRLEKKFRYAT HHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-glutamine [Periplasm]; H2O [C]
Specific reaction: ATP + L-glutamine [Periplasm] + H2O = ADP + phosphate + L-glutamine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7551042; 9384377 [H]