Click here to switch to the map view.

The map label for this gene is rpfG [H]

Identifier: 39997716

GI number: 39997716

Start: 2892888

End: 2895026

Strand: Direct

Name: rpfG [H]

Synonym: GSU2622

Alternate gene names: 39997716

Gene position: 2892888-2895026 (Clockwise)

Preceding gene: 39997693

Following gene: 39997717

Centisome position: 75.85

GC content: 59.79

Gene sequence:

>2139_bases
ATGAATTCTCTTCGAGTAAAAATTCTCGGCATGATAACCCTGATCGTCGTGGTGATCGTTGCGACGTTCGGATACCTGGA
ATATCGCAACCAGCAGCGTACCATCACCCGCATTTCGGCACGCAACGCCCAGATCCTCGCCACCACCATCCAGAACAGTA
TCGAAAACGTCATGATGAGCGGGCAATCAGACGAGGTGACCCGCATCCTGACGCGCCTCAAGGCGCACGAAGCCATCAAC
AGCCTCACCATCTTCGACGAAAACGGCCGCATCCTCAACTCCTCCGACAAGCGCGAAATCGGCGGCCAAGTGGATGTGCA
GGAACTGGAGGCCTACCGCAAGGGAAACGCCATCCACCTGCACAGCGATGGCGCCCACCAGCAGTTTCACAGCATCTCCC
TCATTTACAACAAGCCTGCCTGCCAGGGATGCCACGACGCCGGCCAGGCCATTCTCGGCGCCCTCGAGATCGAGCTTCCC
ATAGACTACCTCCAGGAGGATCTGGCCAAGGGCAAGAGTTTTGCCCTGACTTCGACCCTGTTCATGGTCCTGCTGATCTT
CGTCACCATATCGCTCTTTCTCCACGCCTACGTGAACCGCCCCCTGAAGACCATCATTGCGTCAATGCAGCGGGTGGAGC
ACGGCGACTTCAATGTGCGGAGCGATATTTCCAGCAGCGACGACATGATGGCGCTGTCCGACAACTTCAACATGATGGTG
AACAAGCTCAAGTACTACATGGAAACCACCATCAGCCACGAGCGTGAATTGGCCCGGGCCCAGTCCAAGTTGTCCCACCA
CCACGAAATGCACATCATGAACCAGAAGCTGGAGGAGCAGCTCAGTGAGATCGAGAACCTGAACGTCAGCATGGAAGAGC
GGATCGAGGAGATCGAAGAGGCGAACTACAAAATAGCCGACCTGGCCAGCGAACTGGAGGACAAGAACACCAACCTCGAG
CAGGCCGTCGCGAGGCTTTCGACTCTCTACAAGGTGGGTCTCGCCGTCAACTCGACCATGGAGCCCGAGCGGCTCTTCAA
CCTGATCGTGAAGACCACGGTCGACACCCTCCGCGCCCAGATCGGCTACATCATCCTCTACTCGCCCCGGGAGAAGAATC
TGCAGGTGACGACGCTGCTGGGCCACACCATCCCGGAGGGCTCGACGACAACGCTGCCCATGAAGCAGTCGAGCGTATCC
ACCTGGGTCATCGAGAATCGCCGACCGCTCCTCATCACCACCATGGACGAATGGCCCCAGTTCGACCGGTACAGCTCCCT
GGGATACGAACGCAGAACCCTCATTTGCGCCCCGCTCCAGATCAAGGACGAAATCATCGGCACCATTACGGTGGTGAACA
AGGACGACAACTCCACCTACACCATCCAGGAACTGGAACTGCTCTCCACCATCGCCGCCCAGGCGAGCATCGCCATCAAG
AACGCCCAGCTCTACGACGAGCAGCAGGCAACCTATCTTCACACCATCCAGGCGCTGGTTTCCGCCATCGAGGCGAGCGA
CAGCTATACCCGCGGCCACTCGGAGCGGGTGACCCGTTACTCCACGGAGCTGGCGCGCAAGCTGCGCCTTTCCGCCGATC
GCATCAAGGTGATCGAACGGGCCGCTATCCTGCACGACATCGGCAAGATCGGCATCGACCTGAGCCTGCTCCACAAGGAA
GGCAAACTCTCGCCGGACGAAATCCGCGACCTTCAACAGCATCCGGTGATCGGCATGAAGATCCTGGAGCCGATCGACTT
TCTCCAGGATGTGCGCCAGTGCATCGGCCAGCACCACGAGCGGTACGACGGCCGCGGCTACCCGAACCGCCTCGGCCGGG
AGGAGCAGTTGCTCGAATCCCGCATCCTCGCCGTGGCCGATGCCTTCGACGCCATGACCTCCGATCGTCCCTACCGCAAG
GCCCTGCCGGTGGATCTGGCGGTGCGGGAATTGATCGACAACGTGGGCACTCAATTCGACCCCGAACTGGTACCGCCCTT
CGTCGAACTCCTGGAATCGGGCATCCTGGGCATCACCTTCCAGCGGAAAGAGCCGGGAGCCTCCTGCCCTGTCCGCGATC
ATCGGCGCGCGGAGCGCAAGGTGGTCGCCATCAGCGAATACGGCCACCGCACCAACTGA

Upstream 100 bases:

>100_bases
GACAATTTGACAACAAGAAGCCGCCATATCACTTGACTTTGATGCCATTTCCTGCGATTTGACGAATAATCACCCCATAG
TGGCACATGGATATCCCTTC

Downstream 100 bases:

>100_bases
CCCCCGAAGCACCAGCCGACATTTGCCCACCGGTGGAGATCGTGGTATAACCACCACTGATTCATCGCATCCTGCGCCCA
TTTTATCCAGACAGGAATCG

Product: HAMP domain/GAF domain/HD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 712; Mature: 712

Protein sequence:

>712_residues
MNSLRVKILGMITLIVVVIVATFGYLEYRNQQRTITRISARNAQILATTIQNSIENVMMSGQSDEVTRILTRLKAHEAIN
SLTIFDENGRILNSSDKREIGGQVDVQELEAYRKGNAIHLHSDGAHQQFHSISLIYNKPACQGCHDAGQAILGALEIELP
IDYLQEDLAKGKSFALTSTLFMVLLIFVTISLFLHAYVNRPLKTIIASMQRVEHGDFNVRSDISSSDDMMALSDNFNMMV
NKLKYYMETTISHERELARAQSKLSHHHEMHIMNQKLEEQLSEIENLNVSMEERIEEIEEANYKIADLASELEDKNTNLE
QAVARLSTLYKVGLAVNSTMEPERLFNLIVKTTVDTLRAQIGYIILYSPREKNLQVTTLLGHTIPEGSTTTLPMKQSSVS
TWVIENRRPLLITTMDEWPQFDRYSSLGYERRTLICAPLQIKDEIIGTITVVNKDDNSTYTIQELELLSTIAAQASIAIK
NAQLYDEQQATYLHTIQALVSAIEASDSYTRGHSERVTRYSTELARKLRLSADRIKVIERAAILHDIGKIGIDLSLLHKE
GKLSPDEIRDLQQHPVIGMKILEPIDFLQDVRQCIGQHHERYDGRGYPNRLGREEQLLESRILAVADAFDAMTSDRPYRK
ALPVDLAVRELIDNVGTQFDPELVPPFVELLESGILGITFQRKEPGASCPVRDHRRAERKVVAISEYGHRTN

Sequences:

>Translated_712_residues
MNSLRVKILGMITLIVVVIVATFGYLEYRNQQRTITRISARNAQILATTIQNSIENVMMSGQSDEVTRILTRLKAHEAIN
SLTIFDENGRILNSSDKREIGGQVDVQELEAYRKGNAIHLHSDGAHQQFHSISLIYNKPACQGCHDAGQAILGALEIELP
IDYLQEDLAKGKSFALTSTLFMVLLIFVTISLFLHAYVNRPLKTIIASMQRVEHGDFNVRSDISSSDDMMALSDNFNMMV
NKLKYYMETTISHERELARAQSKLSHHHEMHIMNQKLEEQLSEIENLNVSMEERIEEIEEANYKIADLASELEDKNTNLE
QAVARLSTLYKVGLAVNSTMEPERLFNLIVKTTVDTLRAQIGYIILYSPREKNLQVTTLLGHTIPEGSTTTLPMKQSSVS
TWVIENRRPLLITTMDEWPQFDRYSSLGYERRTLICAPLQIKDEIIGTITVVNKDDNSTYTIQELELLSTIAAQASIAIK
NAQLYDEQQATYLHTIQALVSAIEASDSYTRGHSERVTRYSTELARKLRLSADRIKVIERAAILHDIGKIGIDLSLLHKE
GKLSPDEIRDLQQHPVIGMKILEPIDFLQDVRQCIGQHHERYDGRGYPNRLGREEQLLESRILAVADAFDAMTSDRPYRK
ALPVDLAVRELIDNVGTQFDPELVPPFVELLESGILGITFQRKEPGASCPVRDHRRAERKVVAISEYGHRTN
>Mature_712_residues
MNSLRVKILGMITLIVVVIVATFGYLEYRNQQRTITRISARNAQILATTIQNSIENVMMSGQSDEVTRILTRLKAHEAIN
SLTIFDENGRILNSSDKREIGGQVDVQELEAYRKGNAIHLHSDGAHQQFHSISLIYNKPACQGCHDAGQAILGALEIELP
IDYLQEDLAKGKSFALTSTLFMVLLIFVTISLFLHAYVNRPLKTIIASMQRVEHGDFNVRSDISSSDDMMALSDNFNMMV
NKLKYYMETTISHERELARAQSKLSHHHEMHIMNQKLEEQLSEIENLNVSMEERIEEIEEANYKIADLASELEDKNTNLE
QAVARLSTLYKVGLAVNSTMEPERLFNLIVKTTVDTLRAQIGYIILYSPREKNLQVTTLLGHTIPEGSTTTLPMKQSSVS
TWVIENRRPLLITTMDEWPQFDRYSSLGYERRTLICAPLQIKDEIIGTITVVNKDDNSTYTIQELELLSTIAAQASIAIK
NAQLYDEQQATYLHTIQALVSAIEASDSYTRGHSERVTRYSTELARKLRLSADRIKVIERAAILHDIGKIGIDLSLLHKE
GKLSPDEIRDLQQHPVIGMKILEPIDFLQDVRQCIGQHHERYDGRGYPNRLGREEQLLESRILAVADAFDAMTSDRPYRK
ALPVDLAVRELIDNVGTQFDPELVPPFVELLESGILGITFQRKEPGASCPVRDHRRAERKVVAISEYGHRTN

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 80630; Mature: 80630

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50885 HAMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLRVKILGMITLIVVVIVATFGYLEYRNQQRTITRISARNAQILATTIQNSIENVMMS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
GQSDEVTRILTRLKAHEAINSLTIFDENGRILNSSDKREIGGQVDVQELEAYRKGNAIHL
CCCHHHHHHHHHHHHHHHHCCEEEECCCCCEECCCCHHHCCCCCCHHHHHHHHCCCEEEE
HSDGAHQQFHSISLIYNKPACQGCHDAGQAILGALEIELPIDYLQEDLAKGKSFALTSTL
ECCCCHHHHHEEEEEECCCCCCCHHHHHHHHHHHHEEECCHHHHHHHHHCCCCHHHHHHH
FMVLLIFVTISLFLHAYVNRPLKTIIASMQRVEHGDFNVRSDISSSDDMMALSDNFNMMV
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHH
NKLKYYMETTISHERELARAQSKLSHHHEMHIMNQKLEEQLSEIENLNVSMEERIEEIEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ANYKIADLASELEDKNTNLEQAVARLSTLYKVGLAVNSTMEPERLFNLIVKTTVDTLRAQ
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
IGYIILYSPREKNLQVTTLLGHTIPEGSTTTLPMKQSSVSTWVIENRRPLLITTMDEWPQ
HCEEEEECCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCEEEEECCCCEEEEECCCCCC
FDRYSSLGYERRTLICAPLQIKDEIIGTITVVNKDDNSTYTIQELELLSTIAAQASIAIK
CHHHHHCCCCCCEEEECCCHHCCCCEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHEEE
NAQLYDEQQATYLHTIQALVSAIEASDSYTRGHSERVTRYSTELARKLRLSADRIKVIER
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
AAILHDIGKIGIDLSLLHKEGKLSPDEIRDLQQHPVIGMKILEPIDFLQDVRQCIGQHHE
HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
RYDGRGYPNRLGREEQLLESRILAVADAFDAMTSDRPYRKALPVDLAVRELIDNVGTQFD
HCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCC
PELVPPFVELLESGILGITFQRKEPGASCPVRDHRRAERKVVAISEYGHRTN
CCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHEEEEEECCCCCCC
>Mature Secondary Structure
MNSLRVKILGMITLIVVVIVATFGYLEYRNQQRTITRISARNAQILATTIQNSIENVMMS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
GQSDEVTRILTRLKAHEAINSLTIFDENGRILNSSDKREIGGQVDVQELEAYRKGNAIHL
CCCHHHHHHHHHHHHHHHHCCEEEECCCCCEECCCCHHHCCCCCCHHHHHHHHCCCEEEE
HSDGAHQQFHSISLIYNKPACQGCHDAGQAILGALEIELPIDYLQEDLAKGKSFALTSTL
ECCCCHHHHHEEEEEECCCCCCCHHHHHHHHHHHHEEECCHHHHHHHHHCCCCHHHHHHH
FMVLLIFVTISLFLHAYVNRPLKTIIASMQRVEHGDFNVRSDISSSDDMMALSDNFNMMV
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHH
NKLKYYMETTISHERELARAQSKLSHHHEMHIMNQKLEEQLSEIENLNVSMEERIEEIEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ANYKIADLASELEDKNTNLEQAVARLSTLYKVGLAVNSTMEPERLFNLIVKTTVDTLRAQ
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
IGYIILYSPREKNLQVTTLLGHTIPEGSTTTLPMKQSSVSTWVIENRRPLLITTMDEWPQ
HCEEEEECCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCEEEEECCCCEEEEECCCCCC
FDRYSSLGYERRTLICAPLQIKDEIIGTITVVNKDDNSTYTIQELELLSTIAAQASIAIK
CHHHHHCCCCCCEEEECCCHHCCCCEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHEEE
NAQLYDEQQATYLHTIQALVSAIEASDSYTRGHSERVTRYSTELARKLRLSADRIKVIER
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
AAILHDIGKIGIDLSLLHKEGKLSPDEIRDLQQHPVIGMKILEPIDFLQDVRQCIGQHHE
HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
RYDGRGYPNRLGREEQLLESRILAVADAFDAMTSDRPYRKALPVDLAVRELIDNVGTQFD
HCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCC
PELVPPFVELLESGILGITFQRKEPGASCPVRDHRRAERKVVAISEYGHRTN
CCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]