Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
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Accession | NC_002939 |
Length | 3,814,139 |
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The map label for this gene is 39997572
Identifier: 39997572
GI number: 39997572
Start: 2717042
End: 2719636
Strand: Direct
Name: 39997572
Synonym: GSU2477
Alternate gene names: NA
Gene position: 2717042-2719636 (Clockwise)
Preceding gene: 39997571
Following gene: 39997573
Centisome position: 71.24
GC content: 61.54
Gene sequence:
>2595_bases ATGAACCGCAAACTGAGACGAGCCAACCTGAAAGCAAGCGAGCCGACGCCCCACGAGACCGGCAATGTAATCAACTACAT GCGGCAGGGTCGCTACGCAGAGGCGGCGCATCTTGCAAAGGGCCTTACCGAACGGTTCCCCGATCATGGTTTCGGCTGGA AGATACTGGGGATCTGCACCTTGCTGCTGGGGCAGAACGGGGATGCGCTGCCCCTGTTCCTGAAGGCCGCCGGCCTGTTG CCCGACGACCCGGATATCCACTGCAATATCGGCATCATCTACTATGAGCTGAATCAGCTCAACGAGGCTGAATACTACTG CCGCTACGCGCTGAAGCTGCGGCCGAACGACGCCATCGCGCACAACAATCTCGGCAACATTCTGAGCAGCCTGGGGCGGC TGGACGAGGCGGAAGCCTGTTTCCGCCGCGCCATCGAGAACAACCCGGATCTGGCTCAGGCGCACTACAACCTCGGCTCC GCGCTTCAGGCCCTGGGCCGCCTGGAGGAAGCGGAGAGCTGCTATCGCCGCGCAACGGCAATCAGACCGACGTATGAGGA GGCCTACGCGAGCCTCGGCAACGTCCTTAAGGAAATGGGCCGCCTGGATGAGGCGCTCGAAAGCTGGAAACTGTCTCTCG CGCACCAGGAAGATTGGACAAACGCATTACGGCGCCTGACCAATCCCCTGCTCATGGACGGGGATCTGACCCGCGGTCCC GAGTATCCCGCCGCGGACGCGGCAGAGGGACAGCCGCGGCAACTATCGTCACATCCGGCGGCGGCATCCGTAGAGTCGCT CGACCGGAAGTATCGGGTCCCCTCCCATGGGCATGACGGATCTGCCGAAGCGGGAGCCGTTGCCGGGAGAGACGAAAACG CGCCCCGCCCCCTGCGCATTGTGTTGGTCTACCCTCCGTTGTGGCAGATACCGTCCGCGGATCTGGCCGTACCGGAAGGC ATGCCGTTCGGCCCGCCCGCCACCGCCGGCGGACCGGTCGCCATCAGCAGGGAACTCAAGACCATTACCCAAGGCGTGCT GTCCATCGCGGCCCAGGCGAAAAAAGCCGGGCACGACGTCCGCGTGTACAATCTGTTCAACGCGCCCTGGGCCGACATCG TGGCCCTCATCGCCGGAACCGGGGCCGACGTGTACGGCGTATCCGCCTACAACTCCAACCGGCGCGGCATGGGTGCGCTG TGCGCCCTGATCAGACAGTATCATCCGCACGCCCACATTACCGTCGGCGGCCCCTTCGCAACGACGCTCCCCCTTGAAAC GCTGCGCTATTACCGCGCGATCGATACGGTTGTCGTCGGCGAAGGCGAAGAGACCTTCATGGAACTGCTCGACCATATCC GCTCGCACCGGCCGGCAGTTGGAATCCCGGGCACTGCGTGGCGAAACGGCGACGAGGTGGCGCTCGGTCCAGTGCGCCCC CGGATCGGCGACCTCGACACGCTTGCATCCCATTTTGACTACTATTCAAGCAATATCGTGATGACGTCGCGCGGCTGCCC TTCCAAATGCTCGTTCTGCGGCAATCCCGTATTGTGGGGACGGAAGATCCGTTTTTACTCCACAGACTACTGCATTGACA TGTTCAGGAAGGCACTGGCCCGGCTGCCGGTGCCCTACCTCATGATCGCAGACGACACCTTCACCGCCAACCAGCAGCGT ACCCTGAACATGTGCGACGCGATCATCGGGAACAAGCTCGACTTTCTCTGGAGCTGCAGCACCCGCGTGGATGCCATGGA GGACAAGGTACTGCACAGGATGAGGCGGGCAGGCTGCCAGGAGATCATGATCGGGGTGGAATCGGGGTCACCGGAGATCC TTGAGAGGATACACAAGGGGATCACCCCCGAAATGGTCCTCACGGTGACCCGCGCGGCCAAAAAGTACGGCATGCTCGTC CACTACTACATGATGGTGATCAATCGTGGAGAGACGCCCGACACGCTCCAGGCGAGCATCGACCTGATCAAGGCCGGTCG GCCCAACAGCTACGACCTCACGCCACTGATGTTTCTTCCGGGCACGGAAGACTACGGTCATCTGTGCGAACAACAGGGAT TGACCTCGGATATCTTCTTCCGGAACGACTTCATGGATATATCCGTGGAAAGAAAGCGCAAAAAAGACCTGGATACGGTC ATGCAGCATCTTTACTGCAGCATCGGAACCATCGGCGGCTACGAATATACCGTAGCGGAAAGGGAAGCCGTCGTGGAGCA TCTGCCCGACGTGCCCACCGTCCATGTGGAGCTCGCCAACGCATACCTTCGCGCGGGCCAGTTAGACAAAGCCACGGCGG CATTGACTCGGGCAGAGGAGCTGGGCTTCCCCATCGGCAACATCATCCTCAACCAGCACGCGTGCATTGCCCTTGCACGC AATCAGATCGACACGTCCCTCGATTTCCTGGAGCGGGCGTGCCGGTCCTTCCCTGACGTCACGGTGAAGGGCAACTACGA TAAACTGGCGGCCTGGATCGACAGCCGTACGAGCGGCCAGGTCAAGCCGTGCCTGCTGTGCGATTCCGTCCGGGCCCAGG ATTTCGTGTTCCGCGCCGATGAAACCGCACCATAG
Upstream 100 bases:
>100_bases CCTGCTGGTTCTTTCTGAAGAAAATCGTGACCCCATGACATCCCTTCGCACGGGGCAGATCAGACATGCATCCCGTATGT AACGTCTTAATGGTGAACCA
Downstream 100 bases:
>100_bases TGTGCCGGTGCCACCCTGACCACCACTTTCCCACCCTGCACGGCCCCGCTCACGCGGGGCCTTCGTTTTTCCCTCCCCGG CCTCCGGCACGCGCGGTCTC
Product: radical SAM protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 864; Mature: 864
Protein sequence:
>864_residues MNRKLRRANLKASEPTPHETGNVINYMRQGRYAEAAHLAKGLTERFPDHGFGWKILGICTLLLGQNGDALPLFLKAAGLL PDDPDIHCNIGIIYYELNQLNEAEYYCRYALKLRPNDAIAHNNLGNILSSLGRLDEAEACFRRAIENNPDLAQAHYNLGS ALQALGRLEEAESCYRRATAIRPTYEEAYASLGNVLKEMGRLDEALESWKLSLAHQEDWTNALRRLTNPLLMDGDLTRGP EYPAADAAEGQPRQLSSHPAAASVESLDRKYRVPSHGHDGSAEAGAVAGRDENAPRPLRIVLVYPPLWQIPSADLAVPEG MPFGPPATAGGPVAISRELKTITQGVLSIAAQAKKAGHDVRVYNLFNAPWADIVALIAGTGADVYGVSAYNSNRRGMGAL CALIRQYHPHAHITVGGPFATTLPLETLRYYRAIDTVVVGEGEETFMELLDHIRSHRPAVGIPGTAWRNGDEVALGPVRP RIGDLDTLASHFDYYSSNIVMTSRGCPSKCSFCGNPVLWGRKIRFYSTDYCIDMFRKALARLPVPYLMIADDTFTANQQR TLNMCDAIIGNKLDFLWSCSTRVDAMEDKVLHRMRRAGCQEIMIGVESGSPEILERIHKGITPEMVLTVTRAAKKYGMLV HYYMMVINRGETPDTLQASIDLIKAGRPNSYDLTPLMFLPGTEDYGHLCEQQGLTSDIFFRNDFMDISVERKRKKDLDTV MQHLYCSIGTIGGYEYTVAEREAVVEHLPDVPTVHVELANAYLRAGQLDKATAALTRAEELGFPIGNIILNQHACIALAR NQIDTSLDFLERACRSFPDVTVKGNYDKLAAWIDSRTSGQVKPCLLCDSVRAQDFVFRADETAP
Sequences:
>Translated_864_residues MNRKLRRANLKASEPTPHETGNVINYMRQGRYAEAAHLAKGLTERFPDHGFGWKILGICTLLLGQNGDALPLFLKAAGLL PDDPDIHCNIGIIYYELNQLNEAEYYCRYALKLRPNDAIAHNNLGNILSSLGRLDEAEACFRRAIENNPDLAQAHYNLGS ALQALGRLEEAESCYRRATAIRPTYEEAYASLGNVLKEMGRLDEALESWKLSLAHQEDWTNALRRLTNPLLMDGDLTRGP EYPAADAAEGQPRQLSSHPAAASVESLDRKYRVPSHGHDGSAEAGAVAGRDENAPRPLRIVLVYPPLWQIPSADLAVPEG MPFGPPATAGGPVAISRELKTITQGVLSIAAQAKKAGHDVRVYNLFNAPWADIVALIAGTGADVYGVSAYNSNRRGMGAL CALIRQYHPHAHITVGGPFATTLPLETLRYYRAIDTVVVGEGEETFMELLDHIRSHRPAVGIPGTAWRNGDEVALGPVRP RIGDLDTLASHFDYYSSNIVMTSRGCPSKCSFCGNPVLWGRKIRFYSTDYCIDMFRKALARLPVPYLMIADDTFTANQQR TLNMCDAIIGNKLDFLWSCSTRVDAMEDKVLHRMRRAGCQEIMIGVESGSPEILERIHKGITPEMVLTVTRAAKKYGMLV HYYMMVINRGETPDTLQASIDLIKAGRPNSYDLTPLMFLPGTEDYGHLCEQQGLTSDIFFRNDFMDISVERKRKKDLDTV MQHLYCSIGTIGGYEYTVAEREAVVEHLPDVPTVHVELANAYLRAGQLDKATAALTRAEELGFPIGNIILNQHACIALAR NQIDTSLDFLERACRSFPDVTVKGNYDKLAAWIDSRTSGQVKPCLLCDSVRAQDFVFRADETAP >Mature_864_residues MNRKLRRANLKASEPTPHETGNVINYMRQGRYAEAAHLAKGLTERFPDHGFGWKILGICTLLLGQNGDALPLFLKAAGLL PDDPDIHCNIGIIYYELNQLNEAEYYCRYALKLRPNDAIAHNNLGNILSSLGRLDEAEACFRRAIENNPDLAQAHYNLGS ALQALGRLEEAESCYRRATAIRPTYEEAYASLGNVLKEMGRLDEALESWKLSLAHQEDWTNALRRLTNPLLMDGDLTRGP EYPAADAAEGQPRQLSSHPAAASVESLDRKYRVPSHGHDGSAEAGAVAGRDENAPRPLRIVLVYPPLWQIPSADLAVPEG MPFGPPATAGGPVAISRELKTITQGVLSIAAQAKKAGHDVRVYNLFNAPWADIVALIAGTGADVYGVSAYNSNRRGMGAL CALIRQYHPHAHITVGGPFATTLPLETLRYYRAIDTVVVGEGEETFMELLDHIRSHRPAVGIPGTAWRNGDEVALGPVRP RIGDLDTLASHFDYYSSNIVMTSRGCPSKCSFCGNPVLWGRKIRFYSTDYCIDMFRKALARLPVPYLMIADDTFTANQQR TLNMCDAIIGNKLDFLWSCSTRVDAMEDKVLHRMRRAGCQEIMIGVESGSPEILERIHKGITPEMVLTVTRAAKKYGMLV HYYMMVINRGETPDTLQASIDLIKAGRPNSYDLTPLMFLPGTEDYGHLCEQQGLTSDIFFRNDFMDISVERKRKKDLDTV MQHLYCSIGTIGGYEYTVAEREAVVEHLPDVPTVHVELANAYLRAGQLDKATAALTRAEELGFPIGNIILNQHACIALAR NQIDTSLDFLERACRSFPDVTVKGNYDKLAAWIDSRTSGQVKPCLLCDSVRAQDFVFRADETAP
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding domain [H]
Homologues:
Organism=Homo sapiens, GI32307148, Length=190, Percent_Identity=36.8421052631579, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI32307150, Length=190, Percent_Identity=36.8421052631579, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI118766330, Length=218, Percent_Identity=32.5688073394495, Blast_Score=93, Evalue=1e-18, Organism=Homo sapiens, GI118766328, Length=218, Percent_Identity=32.5688073394495, Blast_Score=93, Evalue=1e-18, Organism=Homo sapiens, GI301336134, Length=306, Percent_Identity=26.4705882352941, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI83415184, Length=306, Percent_Identity=26.4705882352941, Blast_Score=78, Evalue=3e-14, Organism=Homo sapiens, GI22749211, Length=93, Percent_Identity=39.7849462365591, Blast_Score=68, Evalue=4e-11, Organism=Homo sapiens, GI224809432, Length=160, Percent_Identity=30, Blast_Score=67, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115532690, Length=145, Percent_Identity=37.2413793103448, Blast_Score=97, Evalue=5e-20, Organism=Caenorhabditis elegans, GI115532692, Length=141, Percent_Identity=38.2978723404255, Blast_Score=96, Evalue=7e-20, Organism=Caenorhabditis elegans, GI25147174, Length=162, Percent_Identity=30.2469135802469, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI17647755, Length=141, Percent_Identity=39.7163120567376, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI24585827, Length=141, Percent_Identity=39.7163120567376, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI24585829, Length=141, Percent_Identity=39.7163120567376, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI24647123, Length=169, Percent_Identity=31.3609467455621, Blast_Score=78, Evalue=3e-14, Organism=Drosophila melanogaster, GI281364285, Length=97, Percent_Identity=38.1443298969072, Blast_Score=67, Evalue=7e-11, Organism=Drosophila melanogaster, GI24581187, Length=97, Percent_Identity=38.1443298969072, Blast_Score=67, Evalue=7e-11, Organism=Drosophila melanogaster, GI161076610, Length=200, Percent_Identity=28.5, Blast_Score=66, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 95619; Mature: 95619
Theoretical pI: Translated: 6.48; Mature: 6.48
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRKLRRANLKASEPTPHETGNVINYMRQGRYAEAAHLAKGLTERFPDHGFGWKILGICT CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LLLGQNGDALPLFLKAAGLLPDDPDIHCNIGIIYYELNQLNEAEYYCRYALKLRPNDAIA HHHCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCHHEEEEEEEEECCCCCHH HNNLGNILSSLGRLDEAEACFRRAIENNPDLAQAHYNLGSALQALGRLEEAESCYRRATA HCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC IRPTYEEAYASLGNVLKEMGRLDEALESWKLSLAHQEDWTNALRRLTNPLLMDGDLTRGP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC EYPAADAAEGQPRQLSSHPAAASVESLDRKYRVPSHGHDGSAEAGAVAGRDENAPRPLRI CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE VLVYPPLWQIPSADLAVPEGMPFGPPATAGGPVAISRELKTITQGVLSIAAQAKKAGHDV EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCE RVYNLFNAPWADIVALIAGTGADVYGVSAYNSNRRGMGALCALIRQYHPHAHITVGGPFA EEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCH TTLPLETLRYYRAIDTVVVGEGEETFMELLDHIRSHRPAVGIPGTAWRNGDEVALGPVRP HHCCHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC RIGDLDTLASHFDYYSSNIVMTSRGCPSKCSFCGNPVLWGRKIRFYSTDYCIDMFRKALA CCCCHHHHHHHHHHHCCCEEEECCCCCCHHCCCCCCCEECCEEEEECCHHHHHHHHHHHH RLPVPYLMIADDTFTANQQRTLNMCDAIIGNKLDFLWSCSTRVDAMEDKVLHRMRRAGCQ HCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCHH EIMIGVESGSPEILERIHKGITPEMVLTVTRAAKKYGMLVHYYMMVINRGETPDTLQASI HEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH DLIKAGRPNSYDLTPLMFLPGTEDYGHLCEQQGLTSDIFFRNDFMDISVERKRKKDLDTV HHHCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCEEEEECCCEECEEHHHHHCCHHHH MQHLYCSIGTIGGYEYTVAEREAVVEHLPDVPTVHVELANAYLRAGQLDKATAALTRAEE HHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHH LGFPIGNIILNQHACIALARNQIDTSLDFLERACRSFPDVTVKGNYDKLAAWIDSRTSGQ HCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCC VKPCLLCDSVRAQDFVFRADETAP CCCEEEECCCCCCCEEEECCCCCC >Mature Secondary Structure MNRKLRRANLKASEPTPHETGNVINYMRQGRYAEAAHLAKGLTERFPDHGFGWKILGICT CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LLLGQNGDALPLFLKAAGLLPDDPDIHCNIGIIYYELNQLNEAEYYCRYALKLRPNDAIA HHHCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCHHEEEEEEEEECCCCCHH HNNLGNILSSLGRLDEAEACFRRAIENNPDLAQAHYNLGSALQALGRLEEAESCYRRATA HCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC IRPTYEEAYASLGNVLKEMGRLDEALESWKLSLAHQEDWTNALRRLTNPLLMDGDLTRGP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC EYPAADAAEGQPRQLSSHPAAASVESLDRKYRVPSHGHDGSAEAGAVAGRDENAPRPLRI CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE VLVYPPLWQIPSADLAVPEGMPFGPPATAGGPVAISRELKTITQGVLSIAAQAKKAGHDV EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCE RVYNLFNAPWADIVALIAGTGADVYGVSAYNSNRRGMGALCALIRQYHPHAHITVGGPFA EEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCH TTLPLETLRYYRAIDTVVVGEGEETFMELLDHIRSHRPAVGIPGTAWRNGDEVALGPVRP HHCCHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC RIGDLDTLASHFDYYSSNIVMTSRGCPSKCSFCGNPVLWGRKIRFYSTDYCIDMFRKALA CCCCHHHHHHHHHHHCCCEEEECCCCCCHHCCCCCCCEECCEEEEECCHHHHHHHHHHHH RLPVPYLMIADDTFTANQQRTLNMCDAIIGNKLDFLWSCSTRVDAMEDKVLHRMRRAGCQ HCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCHH EIMIGVESGSPEILERIHKGITPEMVLTVTRAAKKYGMLVHYYMMVINRGETPDTLQASI HEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH DLIKAGRPNSYDLTPLMFLPGTEDYGHLCEQQGLTSDIFFRNDFMDISVERKRKKDLDTV HHHCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCEEEEECCCEECEEHHHHHCCHHHH MQHLYCSIGTIGGYEYTVAEREAVVEHLPDVPTVHVELANAYLRAGQLDKATAALTRAEE HHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHH LGFPIGNIILNQHACIALARNQIDTSLDFLERACRSFPDVTVKGNYDKLAAWIDSRTSGQ HCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCC VKPCLLCDSVRAQDFVFRADETAP CCCEEEECCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9679194 [H]