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The map label for this gene is pal [H]

Identifier: 39997403

GI number: 39997403

Start: 2523200

End: 2523763

Strand: Direct

Name: pal [H]

Synonym: GSU2305

Alternate gene names: 39997403

Gene position: 2523200-2523763 (Clockwise)

Preceding gene: 39997402

Following gene: 39997404

Centisome position: 66.15

GC content: 62.23

Gene sequence:

>564_bases
ATGAAATACGTGCATGCCACGCTTCTCGTCGCCTTCAGCATCGCCTGTGCCGCTGGTTGCGCCAAAAAAGAACTCGTCGT
TCCGGAACCGGCGGTCGTCTCCGCACCGGCTCAGCTCCCAGCCACGGAAACTGTCGCGCCGCCGGCAACGACTATTGACG
CACACGAATCCATCGCCGCAACGGACATTGCCGAGGATCGCATCACCCCGGCCGGTAATGCTACCCAAGCGAGTCCCCTG
AAAATCGTCTACTTCGACTTTGACGCCTGGGTCCTCAATGGTGAGGCCCGCGAAATCCTGGCCGGCAATGCCGAGTGGCT
CCGGAAGAACCCCGGGGTGGCGGTCATCCTCGAAGGGCATACCGACGAACGGGGGTCCGATGCCTACAACCTCGCCCTGG
GGGAGCAGCGGGCCAAATCGGCAATGAAGTACCTGCAGACGCTCGGGATCGATGCCGGTCGCATGACCGTGGTGAGCTAT
GGAGAAGAGAAGCCCGCTGTCGAGGGCCACGATGAGTCAGCCTGGGCCGGAAATCGGCGCGTCGAGTTCATCCCCAAACG
CTGA

Upstream 100 bases:

>100_bases
TTTGCCATTGTCCGTCCGTGCCTTCGCATGCGTGCGCCCGGCATGTCTTCGTCGGCCGCAATCGCACAATTACATGCCCA
TGACACTCAAGGAGAATCCA

Downstream 100 bases:

>100_bases
TCAGCCTATTCATAAGGAGCTAGCTATGGAAAAAGTCGAAACATCGAGCGCACCCGGCACTCTCGCCGACCGCTCGCCGC
TGGTGGGAATCCTGACCGGG

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKYVHATLLVAFSIACAAGCAKKELVVPEPAVVSAPAQLPATETVAPPATTIDAHESIAATDIAEDRITPAGNATQASPL
KIVYFDFDAWVLNGEAREILAGNAEWLRKNPGVAVILEGHTDERGSDAYNLALGEQRAKSAMKYLQTLGIDAGRMTVVSY
GEEKPAVEGHDESAWAGNRRVEFIPKR

Sequences:

>Translated_187_residues
MKYVHATLLVAFSIACAAGCAKKELVVPEPAVVSAPAQLPATETVAPPATTIDAHESIAATDIAEDRITPAGNATQASPL
KIVYFDFDAWVLNGEAREILAGNAEWLRKNPGVAVILEGHTDERGSDAYNLALGEQRAKSAMKYLQTLGIDAGRMTVVSY
GEEKPAVEGHDESAWAGNRRVEFIPKR
>Mature_187_residues
MKYVHATLLVAFSIACAAGCAKKELVVPEPAVVSAPAQLPATETVAPPATTIDAHESIAATDIAEDRITPAGNATQASPL
KIVYFDFDAWVLNGEAREILAGNAEWLRKNPGVAVILEGHTDERGSDAYNLALGEQRAKSAMKYLQTLGIDAGRMTVVSY
GEEKPAVEGHDESAWAGNRRVEFIPKR

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=104, Percent_Identity=47.1153846153846, Blast_Score=111, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19971; Mature: 19971

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYVHATLLVAFSIACAAGCAKKELVVPEPAVVSAPAQLPATETVAPPATTIDAHESIAA
CCHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHH
TDIAEDRITPAGNATQASPLKIVYFDFDAWVLNGEAREILAGNAEWLRKNPGVAVILEGH
HHHHHHCCCCCCCCCCCCCEEEEEEECCEEEECCCCCEECCCCHHHHHCCCCEEEEEECC
TDERGSDAYNLALGEQRAKSAMKYLQTLGIDAGRMTVVSYGEEKPAVEGHDESAWAGNRR
CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCE
VEFIPKR
EEEECCC
>Mature Secondary Structure
MKYVHATLLVAFSIACAAGCAKKELVVPEPAVVSAPAQLPATETVAPPATTIDAHESIAA
CCHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHH
TDIAEDRITPAGNATQASPLKIVYFDFDAWVLNGEAREILAGNAEWLRKNPGVAVILEGH
HHHHHHCCCCCCCCCCCCCEEEEEEECCEEEECCCCCEECCCCHHHHHCCCCEEEEEECC
TDERGSDAYNLALGEQRAKSAMKYLQTLGIDAGRMTVVSYGEEKPAVEGHDESAWAGNRR
CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCE
VEFIPKR
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]