Click here to switch to the map view.

The map label for this gene is 39997220

Identifier: 39997220

GI number: 39997220

Start: 2340674

End: 2342068

Strand: Direct

Name: 39997220

Synonym: GSU2122

Alternate gene names: NA

Gene position: 2340674-2342068 (Clockwise)

Preceding gene: 39997219

Following gene: 39997221

Centisome position: 61.37

GC content: 52.69

Gene sequence:

>1395_bases
ATGTCTCTGTTCAAGAAGCGCATCATTAATCCGGCCGGTGGCATGACAGACATCGGCAACGGTGTGAATCTGGACCGCCG
TACAAAGATCGTTCCTATTGCCATCCCCGATGCAGACAGGAAACGGCACACTTTTGTCTTCGGAACCACAGGGGTCGGCA
AAACCCGTCTGTGTGAAAATCTGATCGAACAGGACATCCGCAAGGGGTATTCGGTGGTCTATTTTGATCCCAAGGGTGAC
CAGCAGATCTTCACCAAGATTTACGAAGTGGCCAGAGATAGTGATCGCCTTGAAGAATTGATGCTCGTCACTCCCATTTT
CCCGGAATACTCAGCTGTGGTTGATCCCATGGCCTTCTATTTCATGCCGGATGAACTGGTTGGACATATTGTTTCGGGCA
TCATGGGCGGACGCGAGCCGTTTTACCGGAACATCGCCAAGGAGATCACCACTGCCGTAATCTCCGCCTACATTATTCAG
TCGAAACGACACGGCAACCTGCCCATCCTGAATATTGATGAAATACGGAAGCGCATACGCCGGGAGTCACTCGACTCAAC
CATGAAATCTCTCCGTAGCATCGGTAATGCTGAAGCTGACCTGACAGCTGGCATGATCGAGGACATCCTGAAATCCCCTA
TGGAATATTATGCCAAGGTCTCGTCAACGCTACGCACCGCCCTGATGGAACTCTCGTCGGGCAATATTGGCAAGATCATC
GGTCAGGCCGACTCCAACCGTTTCATAAAGAATCTTGAGTCCGGCAAACCGGTCATCCTGGTAGTCCATACCGGCGCCAT
GATCACCCGCGAGGCCTCTGCTACCCTCGGCAAAGTCCTTCTCTCCATGATTCAATCCTTTGTGGGACGGGTGTACCTCT
CCAACCGCCAGAAGGTCAATCCTCCGCTCTCCATCTTCATCGATGAGGCGCAGAGCCTGCTTTACCAAGGCGTGGAGGAG
CTGTTCGCCAAAGCTGGATCAGCCGATGTCATGGTAACCGCTTTCGCTCAATCGGTGAACCAGGTCTATGCCGTCATCGG
TGAAGAGTTCGGCAAGAGTATCCTCGACAACACCAACACCAAAATTTTCATGCGCTGCTCCGATGCTGAGACAAGCGATT
ACGTGGTCAAGCATTTCGGCGTACAGAATGTGCTGACCGGGATATTCGGCTCGAATCAGGTTACGACCCGTGAGGTCGAA
CAGGACATTCTGCGGGTTCAGGATGTCTTGAGCCTGAAGCCGCGGGAATTTTACATGATGACCTACTCGGGACGCTTCAA
GGGGACCACTAATGACGCCCATGAACCCAAGATGAAGATCATCTTTCCGGAAGCGCCGGCGGTTATCACCTCAAAGCTGT
CTCAATCTAAGCCTGCAACGCCGCCCTCGCCATGA

Upstream 100 bases:

>100_bases
CTGAAACGTATCCCCGGGGCCTTCAGTTCAATCGTGACACCTACAAGAATACCAAAGGACATCATCAACTCAGTAGGGAA
GGAACTGCAAGAGCACCTAT

Downstream 100 bases:

>100_bases
ATGCGACGCTGTTAGGAATATCAGCAACTGTCGGAATCGGCTTTGCTATTTATGGGACAAGGAAATGGCTGCCAAAGGAA
ACTCCTGAACCACAAGAGGA

Product: TraG family protein

Products: NA

Alternate protein names: Sex Pilus Assembly And Mating Pair Formation; Type IV Conjugative Transfer System Protein TraD

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MSLFKKRIINPAGGMTDIGNGVNLDRRTKIVPIAIPDADRKRHTFVFGTTGVGKTRLCENLIEQDIRKGYSVVYFDPKGD
QQIFTKIYEVARDSDRLEELMLVTPIFPEYSAVVDPMAFYFMPDELVGHIVSGIMGGREPFYRNIAKEITTAVISAYIIQ
SKRHGNLPILNIDEIRKRIRRESLDSTMKSLRSIGNAEADLTAGMIEDILKSPMEYYAKVSSTLRTALMELSSGNIGKII
GQADSNRFIKNLESGKPVILVVHTGAMITREASATLGKVLLSMIQSFVGRVYLSNRQKVNPPLSIFIDEAQSLLYQGVEE
LFAKAGSADVMVTAFAQSVNQVYAVIGEEFGKSILDNTNTKIFMRCSDAETSDYVVKHFGVQNVLTGIFGSNQVTTREVE
QDILRVQDVLSLKPREFYMMTYSGRFKGTTNDAHEPKMKIIFPEAPAVITSKLSQSKPATPPSP

Sequences:

>Translated_464_residues
MSLFKKRIINPAGGMTDIGNGVNLDRRTKIVPIAIPDADRKRHTFVFGTTGVGKTRLCENLIEQDIRKGYSVVYFDPKGD
QQIFTKIYEVARDSDRLEELMLVTPIFPEYSAVVDPMAFYFMPDELVGHIVSGIMGGREPFYRNIAKEITTAVISAYIIQ
SKRHGNLPILNIDEIRKRIRRESLDSTMKSLRSIGNAEADLTAGMIEDILKSPMEYYAKVSSTLRTALMELSSGNIGKII
GQADSNRFIKNLESGKPVILVVHTGAMITREASATLGKVLLSMIQSFVGRVYLSNRQKVNPPLSIFIDEAQSLLYQGVEE
LFAKAGSADVMVTAFAQSVNQVYAVIGEEFGKSILDNTNTKIFMRCSDAETSDYVVKHFGVQNVLTGIFGSNQVTTREVE
QDILRVQDVLSLKPREFYMMTYSGRFKGTTNDAHEPKMKIIFPEAPAVITSKLSQSKPATPPSP
>Mature_463_residues
SLFKKRIINPAGGMTDIGNGVNLDRRTKIVPIAIPDADRKRHTFVFGTTGVGKTRLCENLIEQDIRKGYSVVYFDPKGDQ
QIFTKIYEVARDSDRLEELMLVTPIFPEYSAVVDPMAFYFMPDELVGHIVSGIMGGREPFYRNIAKEITTAVISAYIIQS
KRHGNLPILNIDEIRKRIRRESLDSTMKSLRSIGNAEADLTAGMIEDILKSPMEYYAKVSSTLRTALMELSSGNIGKIIG
QADSNRFIKNLESGKPVILVVHTGAMITREASATLGKVLLSMIQSFVGRVYLSNRQKVNPPLSIFIDEAQSLLYQGVEEL
FAKAGSADVMVTAFAQSVNQVYAVIGEEFGKSILDNTNTKIFMRCSDAETSDYVVKHFGVQNVLTGIFGSNQVTTREVEQ
DILRVQDVLSLKPREFYMMTYSGRFKGTTNDAHEPKMKIIFPEAPAVITSKLSQSKPATPPSP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51563; Mature: 51432

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFKKRIINPAGGMTDIGNGVNLDRRTKIVPIAIPDADRKRHTFVFGTTGVGKTRLCEN
CCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHH
LIEQDIRKGYSVVYFDPKGDQQIFTKIYEVARDSDRLEELMLVTPIFPEYSAVVDPMAFY
HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHCCHHHE
FMPDELVGHIVSGIMGGREPFYRNIAKEITTAVISAYIIQSKRHGNLPILNIDEIRKRIR
ECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHH
RESLDSTMKSLRSIGNAEADLTAGMIEDILKSPMEYYAKVSSTLRTALMELSSGNIGKII
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
GQADSNRFIKNLESGKPVILVVHTGAMITREASATLGKVLLSMIQSFVGRVYLSNRQKVN
CCCCCHHHHHHHCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PPLSIFIDEAQSLLYQGVEELFAKAGSADVMVTAFAQSVNQVYAVIGEEFGKSILDNTNT
CCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KIFMRCSDAETSDYVVKHFGVQNVLTGIFGSNQVTTREVEQDILRVQDVLSLKPREFYMM
EEEEEECCCCCHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
TYSGRFKGTTNDAHEPKMKIIFPEAPAVITSKLSQSKPATPPSP
EECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SLFKKRIINPAGGMTDIGNGVNLDRRTKIVPIAIPDADRKRHTFVFGTTGVGKTRLCEN
CCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHH
LIEQDIRKGYSVVYFDPKGDQQIFTKIYEVARDSDRLEELMLVTPIFPEYSAVVDPMAFY
HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHCCHHHE
FMPDELVGHIVSGIMGGREPFYRNIAKEITTAVISAYIIQSKRHGNLPILNIDEIRKRIR
ECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHH
RESLDSTMKSLRSIGNAEADLTAGMIEDILKSPMEYYAKVSSTLRTALMELSSGNIGKII
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
GQADSNRFIKNLESGKPVILVVHTGAMITREASATLGKVLLSMIQSFVGRVYLSNRQKVN
CCCCCHHHHHHHCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PPLSIFIDEAQSLLYQGVEELFAKAGSADVMVTAFAQSVNQVYAVIGEEFGKSILDNTNT
CCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KIFMRCSDAETSDYVVKHFGVQNVLTGIFGSNQVTTREVEQDILRVQDVLSLKPREFYMM
EEEEEECCCCCHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
TYSGRFKGTTNDAHEPKMKIIFPEAPAVITSKLSQSKPATPPSP
EECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA