Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
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Accession | NC_002939 |
Length | 3,814,139 |
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The map label for this gene is braD [H]
Identifier: 39997104
GI number: 39997104
Start: 2199786
End: 2200652
Strand: Direct
Name: braD [H]
Synonym: GSU2006
Alternate gene names: 39997104
Gene position: 2199786-2200652 (Clockwise)
Preceding gene: 39997103
Following gene: 39997105
Centisome position: 57.67
GC content: 58.13
Gene sequence:
>867_bases ATGACCATTTTCCTCCAATCGCTCATCAGCGGCATTCTGATCGGCGGCGTCTACGCCCTGATCGGCATAGGACTCACCAT CATCTTCGGTGTCATGCGGGTCATCAACTTCGCCCACGGCGACATCATGATGATCGGCATGTACCTGACCTATAACTTCT TCTCCCTGGCGGGGGTCGATCCGTTCGTCTCCATCGCCCTCACCATCCCGCTCATGTTCCTCTTCGGAGCCATTCTCCAG AAAACATTCATCAACCGCGTGCTCGGAGCCCTGCCCCAGAACCAAATACTGCTTACCATCGGCCTGGGACTGATTATGAG CAACACGATGATGTTCATCTATACCTCCGACTACAAGATCCTGACTACATCTTATTCGTCGAGCAGCTTCAATATCGGCA CCATCTCCATTTCATGGCCGCTGGCCATCTCTTTCCTGATCACCGCGGCGATAACGCTGCTCCTGTACTGGTTCCTGATG AAGACCGACACGGGTCAGGCGATCCGGGCAACGGCCCAGGACCGGGAAGCGGCCCAGCTCATGGGGATCAACGTGAAGCG GATGTCAATCCTGGCCTTCGGCATGGGTGCGGCCCTGGCCGGCACGGCTGGTGCGCTCATCTCCCCTACCTACTACATCT TCCCCCAGATCGGGAGCACCTTCACCCTCAAGGCATTCGTCATCACGGTTCTCGGGGGAATGGGGAGCATCGTGGGGGCC ACCATCGGCGGCGTCATCATCGGGGTGGCGGAGTCCCTCGGGGCCGTCTACATCTCCTCCGGCTGGAAGGACGTGGTCGT GTTCGTCCTCTTCCTCCTGGTGCTTCTCTTCAAGCCGGCGGGTCTGCTCGGCAAATCCAAAATGTAG
Upstream 100 bases:
>100_bases ACTGAGGCAGGTCAAGGGTCAAGGGCCGGAATGGAGGTTTTCCATCGTTCCGTCCCTTGACCCTTGATGCGTGAACCAGA TTTTTTACCCGGAGCTATCC
Downstream 100 bases:
>100_bases CGGGGTCCGACTGACATGAGACAGATCAATGCTCTGATAACCAATACGCGGGGGGCCTCGCCGGTGTCGATCATCCTCGG GGTGGTCATCCTCGCGGGCC
Product: branched-chain amino acid ABC transporter permease
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MTIFLQSLISGILIGGVYALIGIGLTIIFGVMRVINFAHGDIMMIGMYLTYNFFSLAGVDPFVSIALTIPLMFLFGAILQ KTFINRVLGALPQNQILLTIGLGLIMSNTMMFIYTSDYKILTTSYSSSSFNIGTISISWPLAISFLITAAITLLLYWFLM KTDTGQAIRATAQDREAAQLMGINVKRMSILAFGMGAALAGTAGALISPTYYIFPQIGSTFTLKAFVITVLGGMGSIVGA TIGGVIIGVAESLGAVYISSGWKDVVVFVLFLLVLLFKPAGLLGKSKM
Sequences:
>Translated_288_residues MTIFLQSLISGILIGGVYALIGIGLTIIFGVMRVINFAHGDIMMIGMYLTYNFFSLAGVDPFVSIALTIPLMFLFGAILQ KTFINRVLGALPQNQILLTIGLGLIMSNTMMFIYTSDYKILTTSYSSSSFNIGTISISWPLAISFLITAAITLLLYWFLM KTDTGQAIRATAQDREAAQLMGINVKRMSILAFGMGAALAGTAGALISPTYYIFPQIGSTFTLKAFVITVLGGMGSIVGA TIGGVIIGVAESLGAVYISSGWKDVVVFVLFLLVLLFKPAGLLGKSKM >Mature_287_residues TIFLQSLISGILIGGVYALIGIGLTIIFGVMRVINFAHGDIMMIGMYLTYNFFSLAGVDPFVSIALTIPLMFLFGAILQK TFINRVLGALPQNQILLTIGLGLIMSNTMMFIYTSDYKILTTSYSSSSFNIGTISISWPLAISFLITAAITLLLYWFLMK TDTGQAIRATAQDREAAQLMGINVKRMSILAFGMGAALAGTAGALISPTYYIFPQIGSTFTLKAFVITVLGGMGSIVGAT IGGVIIGVAESLGAVYISSGWKDVVVFVLFLLVLLFKPAGLLGKSKM
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0559
COG function: function code E; Branched-chain amino acid ABC-type transport system, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789866, Length=303, Percent_Identity=34.983498349835, Blast_Score=134, Evalue=8e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 30772; Mature: 30640
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIFLQSLISGILIGGVYALIGIGLTIIFGVMRVINFAHGDIMMIGMYLTYNFFSLAGVD CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC PFVSIALTIPLMFLFGAILQKTFINRVLGALPQNQILLTIGLGLIMSNTMMFIYTSDYKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCEEEEEECCEEE LTTSYSSSSFNIGTISISWPLAISFLITAAITLLLYWFLMKTDTGQAIRATAQDREAAQL EEEECCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH MGINVKRMSILAFGMGAALAGTAGALISPTYYIFPQIGSTFTLKAFVITVLGGMGSIVGA HCCCHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH TIGGVIIGVAESLGAVYISSGWKDVVVFVLFLLVLLFKPAGLLGKSKM HHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure TIFLQSLISGILIGGVYALIGIGLTIIFGVMRVINFAHGDIMMIGMYLTYNFFSLAGVD EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC PFVSIALTIPLMFLFGAILQKTFINRVLGALPQNQILLTIGLGLIMSNTMMFIYTSDYKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCEEEEEECCEEE LTTSYSSSSFNIGTISISWPLAISFLITAAITLLLYWFLMKTDTGQAIRATAQDREAAQL EEEECCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH MGINVKRMSILAFGMGAALAGTAGALISPTYYIFPQIGSTFTLKAFVITVLGGMGSIVGA HCCCHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH TIGGVIIGVAESLGAVYISSGWKDVVVFVLFLLVLLFKPAGLLGKSKM HHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043; 2509433 [H]