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The map label for this gene is yddV [C]

Identifier: 39997035

GI number: 39997035

Start: 2118805

End: 2120115

Strand: Direct

Name: yddV [C]

Synonym: GSU1937

Alternate gene names: 39997035

Gene position: 2118805-2120115 (Clockwise)

Preceding gene: 39997024

Following gene: 39997036

Centisome position: 55.55

GC content: 58.58

Gene sequence:

>1311_bases
ATGCCCACATTCCAGCGACGCTTCAGCATCGTCCAGAAGTTGATCGCCAGCTACGCGGTCGTCATATTCCTCACGACAGC
GGCACTGGTCTTCGCTTTGCTGGGTCTCTACTCCCAAAACAGGACCGCAAAGGAAATAGCCCGAACCGACCTGTTCGTCA
TCAGCGCCACGTATCGCCTTCGCGAGTCGCTCAGCGCCCAGGACCGCTTTGCCGGACGCTACCTGATCCTCAAAAGCGAT
GAATTCAAGGATCTTTTCAACCAGCGCCAGAGCGAATTCATGACAATTCTCGGCGAATTGGGGAGACGGGGCAACGATCA
GCCCTTCCGCGACCTGGTTGCCAGCTATGAAAGGTATCGGCAGGCCACCGAAAGCATCTTCGCCACCGGCAACGGCGATC
CCCTGGCCGCCAAAAAAGACTCGGACGAAGTTGCCGCCCGTATCGACGCCATCTCGGCCCTGCGGCGCGCCCTCCTCGAT
CAGAAGCTGGCCGAAGCGGACCGGCGCGAATCGGCAACGGTGCGGCTGGCCCTGATTCTGGCCTTTTCGGGTTTTATCCT
CGCCCTCACCGTGGCCTCGTTGACCGTCCATTCAATTTCGACCGCCATTACCAAACTCAAAAAGGGGATGCACCGGATCG
CCGAGGGGGACTTTGATTACGATCCCCAGTTGCCGGCCGGAGACGAAATCGGCGCTCTGGCCGGCGACTTCGTCCGCATG
GGGAAAAAGCTGAAGGAACTGGAACAGATGAGCCTCGACGCCAGCCCTCTCACGAGGCTTCCGGGTAACATCGCCATCGA
ACGGGTCCTCAACCGACGGCTCCAGTCGGGTGAGCCCTTTGCGGTCTGCTACGCCGATCTGGACAATTTCAAGGCGTTCA
ACGATCATTACGGGTATATAAAAGCAAGTGAAGTGATAAAATTAACGGCAGAACTGATCCACGACACGGTCCGGCAAATG
GCGGGGGGCGATGCCTTCGTGGGACACGTGGGGGGCGACGACTTCGTCATGGTGGTGGCTTCCGACAAGGGTGGGCCGGT
GTGCGAACATGTCATCACCCGCTTCGACGACTTCATCCGCCAGCATTACAGCGCAGAGGACCTGGCCAAAGGTGCCATCG
AGGGGGTCGACCGCTACGGCGTACCGCGCACCTTCCCCATCATGAGCATTTCAATCGCCGTGGTCATCTGCAGCCGCGAG
GAATTCGCCTCAGCCGTTGATATCGCCAAAGCGGCCGCTGATATCAAAGACTTGCTGAAAAGCACGCCGGGAAGCAATTA
CCTTATCAACCGGCGCAAAGGAAAACGATGA

Upstream 100 bases:

>100_bases
GCGGTGCGTGGGCCATTGCTTCTGCAGAGAGCCAGTCGTTGACTTACCACCCCCTCTGGACTAAAATGAGCTGTTTTTCT
CATCAGAGAGGCGCCATTCA

Downstream 100 bases:

>100_bases
AATTTCGCCTGCTCGCGGCTGTCCTGATCCTGATCCTGCCGACCGGGTGCGCTCCCGTACGCAAAGTCGTGACGGATATT
CGGCAACGTTCAGCCCAGGA

Product: GGDEF domain/HAMP domain-containing protein

Products: NA

Alternate protein names: Response Regulator Receiver Modulated Diguanylate Cyclase; Diguanylate Cyclase; EAL/GGDEF Domain-Containing Protein; GGDEF Domain-Containing Protein; Cyclic Diguanylate Phosphodiesterase Domain Protein; GGDEF Domain Protein; Signal Transduction Protein; Signaling Protein; Response Regulator Receiver; Sensory Box/GGDEF Family Protein; Response Regulator Receiver Protein; EAL Domain-Containing Protein; GGDEF/EAL Sensory Box Protein; Histidine Kinase; Two-Component System Response Regulator Receiver; Response Regulator; EAL Domain Protein; Sensor Protein; Sensory Box Histidine Kinase/Response Regulator; Diguanylate Cyclase/Phosphodiesterase Family Protein; Ggdef Domain Protein; EAL Domain Proteni; Signal Protein; HAMP Domain-Containing Protein; EAL Domain/GGDEF Domain-Containing Protein; EAL Domain/GGDEF Domain Protein; CheY-Like Response Regulator Modulated Diguanylate Cyclase; Diguanylate Phosphodiesterase; GGDEFCBS:EAL Domain-Containing Protein; GGDEF Domain/HAMP Domain-Containing Protein; Phosphodiesterase; EAL Domain-Containing; GGDEF Family Protein; Diguanylate Cyclase/Phosphodiesterase With Cbs Domains; Methyl-Accepting Chemotaxis Sensory Transducer; Eal/Ggdef Domain Protein

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MPTFQRRFSIVQKLIASYAVVIFLTTAALVFALLGLYSQNRTAKEIARTDLFVISATYRLRESLSAQDRFAGRYLILKSD
EFKDLFNQRQSEFMTILGELGRRGNDQPFRDLVASYERYRQATESIFATGNGDPLAAKKDSDEVAARIDAISALRRALLD
QKLAEADRRESATVRLALILAFSGFILALTVASLTVHSISTAITKLKKGMHRIAEGDFDYDPQLPAGDEIGALAGDFVRM
GKKLKELEQMSLDASPLTRLPGNIAIERVLNRRLQSGEPFAVCYADLDNFKAFNDHYGYIKASEVIKLTAELIHDTVRQM
AGGDAFVGHVGGDDFVMVVASDKGGPVCEHVITRFDDFIRQHYSAEDLAKGAIEGVDRYGVPRTFPIMSISIAVVICSRE
EFASAVDIAKAAADIKDLLKSTPGSNYLINRRKGKR

Sequences:

>Translated_436_residues
MPTFQRRFSIVQKLIASYAVVIFLTTAALVFALLGLYSQNRTAKEIARTDLFVISATYRLRESLSAQDRFAGRYLILKSD
EFKDLFNQRQSEFMTILGELGRRGNDQPFRDLVASYERYRQATESIFATGNGDPLAAKKDSDEVAARIDAISALRRALLD
QKLAEADRRESATVRLALILAFSGFILALTVASLTVHSISTAITKLKKGMHRIAEGDFDYDPQLPAGDEIGALAGDFVRM
GKKLKELEQMSLDASPLTRLPGNIAIERVLNRRLQSGEPFAVCYADLDNFKAFNDHYGYIKASEVIKLTAELIHDTVRQM
AGGDAFVGHVGGDDFVMVVASDKGGPVCEHVITRFDDFIRQHYSAEDLAKGAIEGVDRYGVPRTFPIMSISIAVVICSRE
EFASAVDIAKAAADIKDLLKSTPGSNYLINRRKGKR
>Mature_435_residues
PTFQRRFSIVQKLIASYAVVIFLTTAALVFALLGLYSQNRTAKEIARTDLFVISATYRLRESLSAQDRFAGRYLILKSDE
FKDLFNQRQSEFMTILGELGRRGNDQPFRDLVASYERYRQATESIFATGNGDPLAAKKDSDEVAARIDAISALRRALLDQ
KLAEADRRESATVRLALILAFSGFILALTVASLTVHSISTAITKLKKGMHRIAEGDFDYDPQLPAGDEIGALAGDFVRMG
KKLKELEQMSLDASPLTRLPGNIAIERVLNRRLQSGEPFAVCYADLDNFKAFNDHYGYIKASEVIKLTAELIHDTVRQMA
GGDAFVGHVGGDDFVMVVASDKGGPVCEHVITRFDDFIRQHYSAEDLAKGAIEGVDRYGVPRTFPIMSISIAVVICSREE
FASAVDIAKAAADIKDLLKSTPGSNYLINRRKGKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48222; Mature: 48091

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTFQRRFSIVQKLIASYAVVIFLTTAALVFALLGLYSQNRTAKEIARTDLFVISATYRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEHHHHHH
RESLSAQDRFAGRYLILKSDEFKDLFNQRQSEFMTILGELGRRGNDQPFRDLVASYERYR
HHHHCHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
QATESIFATGNGDPLAAKKDSDEVAARIDAISALRRALLDQKLAEADRRESATVRLALIL
HHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFSGFILALTVASLTVHSISTAITKLKKGMHRIAEGDFDYDPQLPAGDEIGALAGDFVRM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
GKKLKELEQMSLDASPLTRLPGNIAIERVLNRRLQSGEPFAVCYADLDNFKAFNDHYGYI
HHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCHHHCCCCCEE
KASEVIKLTAELIHDTVRQMAGGDAFVGHVGGDDFVMVVASDKGGPVCEHVITRFDDFIR
EHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
QHYSAEDLAKGAIEGVDRYGVPRTFPIMSISIAVVICSREEFASAVDIAKAAADIKDLLK
HHCCHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHEEECCHHHHHHHHHHHHHHHHHHHHH
STPGSNYLINRRKGKR
CCCCCCEEEECCCCCC
>Mature Secondary Structure 
PTFQRRFSIVQKLIASYAVVIFLTTAALVFALLGLYSQNRTAKEIARTDLFVISATYRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEHHHHHH
RESLSAQDRFAGRYLILKSDEFKDLFNQRQSEFMTILGELGRRGNDQPFRDLVASYERYR
HHHHCHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
QATESIFATGNGDPLAAKKDSDEVAARIDAISALRRALLDQKLAEADRRESATVRLALIL
HHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFSGFILALTVASLTVHSISTAITKLKKGMHRIAEGDFDYDPQLPAGDEIGALAGDFVRM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
GKKLKELEQMSLDASPLTRLPGNIAIERVLNRRLQSGEPFAVCYADLDNFKAFNDHYGYI
HHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCHHHCCCCCEE
KASEVIKLTAELIHDTVRQMAGGDAFVGHVGGDDFVMVVASDKGGPVCEHVITRFDDFIR
EHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
QHYSAEDLAKGAIEGVDRYGVPRTFPIMSISIAVVICSREEFASAVDIAKAAADIKDLLK
HHCCHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHEEECCHHHHHHHHHHHHHHHHHHHHH
STPGSNYLINRRKGKR
CCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA