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The map label for this gene is yebA [H]

Identifier: 39996936

GI number: 39996936

Start: 2003036

End: 2003794

Strand: Direct

Name: yebA [H]

Synonym: GSU1837

Alternate gene names: 39996936

Gene position: 2003036-2003794 (Clockwise)

Preceding gene: 39996928

Following gene: 39996942

Centisome position: 52.52

GC content: 65.61

Gene sequence:

>759_bases
ATGATCACGGGACACACGGTACGTATCGTCATGCTCGCGGCGCTGGTGGGGCTGACTGCCCCCGAGCGGTCACGGGCCGA
CATATACCGGTTCGTGGACGAGGACGGTGTAGAATGTTTCACCGACTCCCCCAGGAACGGCAAGGCGTCGCTCTATCTGC
GCGAAAAAAAGGCAGCCCGGCCCGGTACCCGTCGCACCGTGCCGCACCACCTGCGGGCTGCCGGCATCACGGGGACATCT
CCTGCAATCAACCCGACCACCCCGTCCCCGTCAGATGCATCCGCGGCGCCTCCGGTCCAGGGGAGGATAACCTCCTTGGT
GGGGCTCCGACACGATCCCATCGACGGCACCATGCGCGAACACCGGGGCATCGACATCGCCGTGCCCGAGGGAACACCGG
TCAGGGCCATCGCGCCGGGGCGCGTGGCCTTTGCGGGCAACCGGCCGGGCTACGGCACCATGGTGGTCCTTGAACACCCG
GACGGCATCATTACACTCTACGCCCACAACTCCATGAATGCGGTGGTGGAAGGGGCAAACGTCTCGGCGGGCGATACCAT
CGCCCTTTCCGGCTCCACGGGGAGATCCACCGGCCCCCACCTCCACTTCGAAGCCTGGCGGGGAGACGTGAACGTCACAT
CATCATATCTGCCCGGTGCTCGAGGCGATCGGATCGGCACCGCTGCTACTCCCCGCGCCGCGGACACCATTCGCAAGATC
CTCCAGGCCGACGGAACCATACTGCTGACCAACCACTGA

Upstream 100 bases:

>100_bases
CCAAACATCGGACAGTTCTGCATCACGCTTTTGCAGCAGGCGTTCATAGCCCGGTTAAACTTGTGTTGTTTTCGGCCGAT
AGAGTATAGTGGAGACCATC

Downstream 100 bases:

>100_bases
TTACCATCGCCACCTTCGTTACCCTCCTCCCGCCCGTTTGGTCCTGCGGGTCGGGACCGCGCTCCAGGGATCATCGGGCC
AGGGATGCTTGGGGTAGCGT

Product: peptidase family M23/M37 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MITGHTVRIVMLAALVGLTAPERSRADIYRFVDEDGVECFTDSPRNGKASLYLREKKAARPGTRRTVPHHLRAAGITGTS
PAINPTTPSPSDASAAPPVQGRITSLVGLRHDPIDGTMREHRGIDIAVPEGTPVRAIAPGRVAFAGNRPGYGTMVVLEHP
DGIITLYAHNSMNAVVEGANVSAGDTIALSGSTGRSTGPHLHFEAWRGDVNVTSSYLPGARGDRIGTAATPRAADTIRKI
LQADGTILLTNH

Sequences:

>Translated_252_residues
MITGHTVRIVMLAALVGLTAPERSRADIYRFVDEDGVECFTDSPRNGKASLYLREKKAARPGTRRTVPHHLRAAGITGTS
PAINPTTPSPSDASAAPPVQGRITSLVGLRHDPIDGTMREHRGIDIAVPEGTPVRAIAPGRVAFAGNRPGYGTMVVLEHP
DGIITLYAHNSMNAVVEGANVSAGDTIALSGSTGRSTGPHLHFEAWRGDVNVTSSYLPGARGDRIGTAATPRAADTIRKI
LQADGTILLTNH
>Mature_252_residues
MITGHTVRIVMLAALVGLTAPERSRADIYRFVDEDGVECFTDSPRNGKASLYLREKKAARPGTRRTVPHHLRAAGITGTS
PAINPTTPSPSDASAAPPVQGRITSLVGLRHDPIDGTMREHRGIDIAVPEGTPVRAIAPGRVAFAGNRPGYGTMVVLEHP
DGIITLYAHNSMNAVVEGANVSAGDTIALSGSTGRSTGPHLHFEAWRGDVNVTSSYLPGARGDRIGTAATPRAADTIRKI
LQADGTILLTNH

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=126, Percent_Identity=42.0634920634921, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082297, Length=93, Percent_Identity=44.0860215053763, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082174, Length=134, Percent_Identity=35.8208955223881, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789099, Length=100, Percent_Identity=43, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 26556; Mature: 26556

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITGHTVRIVMLAALVGLTAPERSRADIYRFVDEDGVECFTDSPRNGKASLYLREKKAAR
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCEEEEEEECCCCC
PGTRRTVPHHLRAAGITGTSPAINPTTPSPSDASAAPPVQGRITSLVGLRHDPIDGTMRE
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHH
HRGIDIAVPEGTPVRAIAPGRVAFAGNRPGYGTMVVLEHPDGIITLYAHNSMNAVVEGAN
HCCCEEECCCCCCEEEECCCEEEEECCCCCCEEEEEEECCCCEEEEEEECCCEEEEECCC
VSAGDTIALSGSTGRSTGPHLHFEAWRGDVNVTSSYLPGARGDRIGTAATPRAADTIRKI
CCCCCEEEEECCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
LQADGTILLTNH
HHCCCEEEEECC
>Mature Secondary Structure
MITGHTVRIVMLAALVGLTAPERSRADIYRFVDEDGVECFTDSPRNGKASLYLREKKAAR
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCEEEEEEECCCCC
PGTRRTVPHHLRAAGITGTSPAINPTTPSPSDASAAPPVQGRITSLVGLRHDPIDGTMRE
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHH
HRGIDIAVPEGTPVRAIAPGRVAFAGNRPGYGTMVVLEHPDGIITLYAHNSMNAVVEGAN
HCCCEEECCCCCCEEEECCCEEEEECCCCCCEEEEEEECCCCEEEEEEECCCEEEEECCC
VSAGDTIALSGSTGRSTGPHLHFEAWRGDVNVTSSYLPGARGDRIGTAATPRAADTIRKI
CCCCCEEEEECCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
LQADGTILLTNH
HHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]