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The map label for this gene is 39995357

Identifier: 39995357

GI number: 39995357

Start: 254133

End: 255596

Strand: Direct

Name: 39995357

Synonym: GSU0247

Alternate gene names: NA

Gene position: 254133-255596 (Clockwise)

Preceding gene: 39995344

Following gene: 39995358

Centisome position: 6.66

GC content: 68.44

Gene sequence:

>1464_bases
ATGAACATTCTCCTGCTCCGCCCCCATCCCGGCAACGACCGGTTCGGCCTCGGCCCCTTCTTTCGGGTCGAGCCCCTGGG
GCTCGAATACATCGGCGCGGCGCTTCGCGCCCACGGCCACACCGTTACCGCGGCAGATCTTCGCTTCCGCCCCGGTGCCG
CAACCTGGGTCAGGCGCACCCGGCCCCGTCTCGTGGGAATATCCTGCCTCCACGCCCTGGAGTACGAGCGGGTGGTTGAA
ACGGCCCGTGAGGTCAGGCGGGCAAGCCCCGATGCCTTCATCTTCGTGGGGGGGCATGCGGCCGCCGCCTTTCCCGCTCC
TCTGGAGTGCGACGCGGTGGACGCCATCTGCCGCGACGACGGGGAGGAAATCGTGCCCCTGGTTGCCGCCGCCCTGGCGA
AGGGTGGGCGGCTTGACGAGGTACCGGGGCTCCGGCTGCGCGAACCCGACGGCTGGCGCGACACCCCCTGCCTCGACCGC
CAGACCTGCCTCGACCTCGTGCCGCTCCCGGCCCGGGACCTGGTGGACCGGCACCGCTCCGGCTACCACTGCCTTCTCTT
TAAGCCGGTCTGGCTCGTGGAGACGGCCCGGGGCTGCCCCCACCGCTGCTCCTTCTGCTCCGTCTGGCAGCTCTACGGCC
GTTCCTGCCGCGAGCGGAGCATTGCCGCGGTGGTGGAGGATTTCGCCACGGCCGGGGATTCGATCTTCGTGGCCGACGAC
CTCTTCTGGCACAATCCGGCCCGGAGCCTGGAGCTGGCCGAGGCGCTGAAAAAGCGCGGGGTTTTCAAACGCTGGATTCT
CGTCCAGACCCGCACCGACCTCATCTGCCGGAGCGCCGACCTCATGGCCGCCTGGCGTCCCCTGGCCAAGGATTTCGACA
TCTTTCTGGGGCTGGAGGCGGCCACGGACAAGGGGCTCGCCGGGATCACCAAGGATTCCGGCGTGGCCGAGAGCGTGGAG
GCGGTCCGCCTTGCCCGCGAACTGCGCTACGGCATCAACGGCAATTTCCTCATCGATCCTGATTGGGGTGAGGACGATTT
CCGCGACCTCTGGGACTTTGTGGCCCGCTACGGCCTCCAGCGGGCCGGGTTCACGATCCTCACGCCCCTGTCCGGCACCG
ATTTCTTCCGGGAAGTGGCCCCGCGCATTGCCCGCCAGCCCTGGTCCAACTTCGACATGCACCACCTCCTGTGGGACCCC
CGGGTGGGCGCCCCGCGTTTCTTCGAGCTCTATGCCGAGACCTGGCGCCGCTCCATCCTCAATACCTCGGGAGACAAGAG
CCTGGTGGACTGGATGAAGCAGGTCCGCCCCTCCCAGATTCCCTACATCGCCCGGGTCCTCTGGCGGACCCAGCGGATGA
TGAAGCCCGAGGCCTATCTCAGGGAGTACGAGGCGACCCGGCCCCGGACAACGGAGCCCCTGGTGGATTTCAGCGCCGGG
GCGTACTGCGGGGGAGCCGCCTGA

Upstream 100 bases:

>100_bases
CAATACGCAGGGAATCAGCTTTAACGAAACATATTACCCTTGACCCCCGCCGCCCTTTTCGGAAACAATACCCCCGTTAC
TTCACCTTGGCGAGATTCAG

Downstream 100 bases:

>100_bases
TGTCCCGTTCCCCTCGGCTGCTGCTGATCTACCCGGCGACCCACAAGCTCGGTTGGGCGCGCTATTTTCAGCTTCCCTCC
CATTCGCTCCAGATGGTGGC

Product: radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MNILLLRPHPGNDRFGLGPFFRVEPLGLEYIGAALRAHGHTVTAADLRFRPGAATWVRRTRPRLVGISCLHALEYERVVE
TAREVRRASPDAFIFVGGHAAAAFPAPLECDAVDAICRDDGEEIVPLVAAALAKGGRLDEVPGLRLREPDGWRDTPCLDR
QTCLDLVPLPARDLVDRHRSGYHCLLFKPVWLVETARGCPHRCSFCSVWQLYGRSCRERSIAAVVEDFATAGDSIFVADD
LFWHNPARSLELAEALKKRGVFKRWILVQTRTDLICRSADLMAAWRPLAKDFDIFLGLEAATDKGLAGITKDSGVAESVE
AVRLARELRYGINGNFLIDPDWGEDDFRDLWDFVARYGLQRAGFTILTPLSGTDFFREVAPRIARQPWSNFDMHHLLWDP
RVGAPRFFELYAETWRRSILNTSGDKSLVDWMKQVRPSQIPYIARVLWRTQRMMKPEAYLREYEATRPRTTEPLVDFSAG
AYCGGAA

Sequences:

>Translated_487_residues
MNILLLRPHPGNDRFGLGPFFRVEPLGLEYIGAALRAHGHTVTAADLRFRPGAATWVRRTRPRLVGISCLHALEYERVVE
TAREVRRASPDAFIFVGGHAAAAFPAPLECDAVDAICRDDGEEIVPLVAAALAKGGRLDEVPGLRLREPDGWRDTPCLDR
QTCLDLVPLPARDLVDRHRSGYHCLLFKPVWLVETARGCPHRCSFCSVWQLYGRSCRERSIAAVVEDFATAGDSIFVADD
LFWHNPARSLELAEALKKRGVFKRWILVQTRTDLICRSADLMAAWRPLAKDFDIFLGLEAATDKGLAGITKDSGVAESVE
AVRLARELRYGINGNFLIDPDWGEDDFRDLWDFVARYGLQRAGFTILTPLSGTDFFREVAPRIARQPWSNFDMHHLLWDP
RVGAPRFFELYAETWRRSILNTSGDKSLVDWMKQVRPSQIPYIARVLWRTQRMMKPEAYLREYEATRPRTTEPLVDFSAG
AYCGGAA
>Mature_487_residues
MNILLLRPHPGNDRFGLGPFFRVEPLGLEYIGAALRAHGHTVTAADLRFRPGAATWVRRTRPRLVGISCLHALEYERVVE
TAREVRRASPDAFIFVGGHAAAAFPAPLECDAVDAICRDDGEEIVPLVAAALAKGGRLDEVPGLRLREPDGWRDTPCLDR
QTCLDLVPLPARDLVDRHRSGYHCLLFKPVWLVETARGCPHRCSFCSVWQLYGRSCRERSIAAVVEDFATAGDSIFVADD
LFWHNPARSLELAEALKKRGVFKRWILVQTRTDLICRSADLMAAWRPLAKDFDIFLGLEAATDKGLAGITKDSGVAESVE
AVRLARELRYGINGNFLIDPDWGEDDFRDLWDFVARYGLQRAGFTILTPLSGTDFFREVAPRIARQPWSNFDMHHLLWDP
RVGAPRFFELYAETWRRSILNTSGDKSLVDWMKQVRPSQIPYIARVLWRTQRMMKPEAYLREYEATRPRTTEPLVDFSAG
AYCGGAA

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 54964; Mature: 54964

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILLLRPHPGNDRFGLGPFFRVEPLGLEYIGAALRAHGHTVTAADLRFRPGAATWVRRT
CEEEEECCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCEEEEECEEECCCHHHHHHHC
RPRLVGISCLHALEYERVVETAREVRRASPDAFIFVGGHAAAAFPAPLECDAVDAICRDD
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCC
GEEIVPLVAAALAKGGRLDEVPGLRLREPDGWRDTPCLDRQTCLDLVPLPARDLVDRHRS
CHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCC
GYHCLLFKPVWLVETARGCPHRCSFCSVWQLYGRSCRERSIAAVVEDFATAGDSIFVADD
CCEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
LFWHNPARSLELAEALKKRGVFKRWILVQTRTDLICRSADLMAAWRPLAKDFDIFLGLEA
HHHCCCCHHHHHHHHHHHCCCHHHEEEEEEHHHHHHCCHHHHHHHHHHHCCCCEEEEEEH
ATDKGLAGITKDSGVAESVEAVRLARELRYGINGNFLIDPDWGEDDFRDLWDFVARYGLQ
HCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCHH
RAGFTILTPLSGTDFFREVAPRIARQPWSNFDMHHLLWDPRVGAPRFFELYAETWRRSIL
HCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHH
NTSGDKSLVDWMKQVRPSQIPYIARVLWRTQRMMKPEAYLREYEATRPRTTEPLVDFSAG
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCC
AYCGGAA
CCCCCCC
>Mature Secondary Structure
MNILLLRPHPGNDRFGLGPFFRVEPLGLEYIGAALRAHGHTVTAADLRFRPGAATWVRRT
CEEEEECCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCEEEEECEEECCCHHHHHHHC
RPRLVGISCLHALEYERVVETAREVRRASPDAFIFVGGHAAAAFPAPLECDAVDAICRDD
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCC
GEEIVPLVAAALAKGGRLDEVPGLRLREPDGWRDTPCLDRQTCLDLVPLPARDLVDRHRS
CHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCC
GYHCLLFKPVWLVETARGCPHRCSFCSVWQLYGRSCRERSIAAVVEDFATAGDSIFVADD
CCEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
LFWHNPARSLELAEALKKRGVFKRWILVQTRTDLICRSADLMAAWRPLAKDFDIFLGLEA
HHHCCCCHHHHHHHHHHHCCCHHHEEEEEEHHHHHHCCHHHHHHHHHHHCCCCEEEEEEH
ATDKGLAGITKDSGVAESVEAVRLARELRYGINGNFLIDPDWGEDDFRDLWDFVARYGLQ
HCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCHH
RAGFTILTPLSGTDFFREVAPRIARQPWSNFDMHHLLWDPRVGAPRFFELYAETWRRSIL
HCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHH
NTSGDKSLVDWMKQVRPSQIPYIARVLWRTQRMMKPEAYLREYEATRPRTTEPLVDFSAG
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCC
AYCGGAA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]