Click here to switch to the map view.

The map label for this gene is 39995356

Identifier: 39995356

GI number: 39995356

Start: 253121

End: 253951

Strand: Reverse

Name: 39995356

Synonym: GSU0246

Alternate gene names: NA

Gene position: 253951-253121 (Counterclockwise)

Preceding gene: 39995361

Following gene: 39995355

Centisome position: 6.66

GC content: 69.43

Gene sequence:

>831_bases
ATGCCCGTTCTGAATGCCCTGACCATCGACGTGGAGGACTGGTACCATGTCTGCGGACTCCCCGGCGAGCCGGTCGTCAG
TCCTGACACGGAGCGGGTCGTTCCCGCCGTCGGACGGCTGCTGGCGCTGCTGGCCAGGCGCGGCTGCCGGGCCACCTTCT
TTCTGCTCGGCTCCGTGGCCCAACGGCATCCGGGCCTGGCGCCGTCAATCGCCGAAGCGGGCCATGAGATTGCTTCGCAC
GGCTGGTCCCACCGGCTCGTGACCGGGCTCTCTCCCGAAGAATTCCGGACGGAGCTGCGGCGAACCGGTGACCTCCTGGA
ACGGCAGACCGGCCGGCGCCCCGTGGGATTCCGGGCACCCCAGTGGTCCCTCTGCCGCCGGCGGACCCCCTGGGCCTTTC
CCATCCTGCGGGATGAGGGATACCGGTACGATTCCAGTCTCTCGCCGCTCCCCTTCGTGGGAGACCGGCGCGGTCCGCGC
GGTCCGTTCAGGATCGACACCCCGGCGGGGCCCCTGGTGGAGGTGCCGCCCCTGGTGACGCGGACCCCCTTGGGAAACCT
GCCGACGGGCGGCGGGTGGGGCTTCCGGTTCTTTCCGCTGGGGCTGATCGGGGCCAGCGTAGCGGGATTGAACCGGCGCG
GCATGCCGGCGGTGCTGTACGTTCATCCCCGGGAGGTTGACCCGGAGGGCCCGCGGCTGGCGCTGCCGCCCCTGCGCTCC
TTCGTGGCCTACGGACCGCGTAGCGATGCGGCACCGCGACTCGACGCCCTGCTGGAACGATTCTCATTCACTACACTCGA
TCAGTTGGTTGACCGTTGGGATACTGTATAA

Upstream 100 bases:

>100_bases
GCTGATTCCCTGCGTATTGACTAAAGTTAGGCGGGAGTATTATACTTTCGCTATTCTTGAAAGCAGAGGGGGAGATGCCA
TCCCCTTTTTTTTCTCGGTG

Downstream 100 bases:

>100_bases
TCATACCAGCCTACAACGCGGCCCGGACCCTGCCGGCCGTGGTCCGGGAAGTCCTCGGCCTGGGGATGCCATGCCTCGTG
GTGGACGACGGCTCCACCGA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Polysaccharide Deacetylase Family Protein; Polysaccharide Deacetylase Domain-Containing Protein; Xylanase/Chitin Deacetylase; PEP-CTERM Locus Polysaccharide Deactylase; Polysaccharide Deactylase Domain-Containing Protein; Polysaccharide Deacetylase Family Sporulation Protein PdaB; Polysaccharide Deacetylase Domain Protein; Saccharide Deacetylase Slightly; Polysaccharide Deacetylase Pda4C; Deacetylase; Chitooligosaccharide Deacetylase

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MPVLNALTIDVEDWYHVCGLPGEPVVSPDTERVVPAVGRLLALLARRGCRATFFLLGSVAQRHPGLAPSIAEAGHEIASH
GWSHRLVTGLSPEEFRTELRRTGDLLERQTGRRPVGFRAPQWSLCRRRTPWAFPILRDEGYRYDSSLSPLPFVGDRRGPR
GPFRIDTPAGPLVEVPPLVTRTPLGNLPTGGGWGFRFFPLGLIGASVAGLNRRGMPAVLYVHPREVDPEGPRLALPPLRS
FVAYGPRSDAAPRLDALLERFSFTTLDQLVDRWDTV

Sequences:

>Translated_276_residues
MPVLNALTIDVEDWYHVCGLPGEPVVSPDTERVVPAVGRLLALLARRGCRATFFLLGSVAQRHPGLAPSIAEAGHEIASH
GWSHRLVTGLSPEEFRTELRRTGDLLERQTGRRPVGFRAPQWSLCRRRTPWAFPILRDEGYRYDSSLSPLPFVGDRRGPR
GPFRIDTPAGPLVEVPPLVTRTPLGNLPTGGGWGFRFFPLGLIGASVAGLNRRGMPAVLYVHPREVDPEGPRLALPPLRS
FVAYGPRSDAAPRLDALLERFSFTTLDQLVDRWDTV
>Mature_275_residues
PVLNALTIDVEDWYHVCGLPGEPVVSPDTERVVPAVGRLLALLARRGCRATFFLLGSVAQRHPGLAPSIAEAGHEIASHG
WSHRLVTGLSPEEFRTELRRTGDLLERQTGRRPVGFRAPQWSLCRRRTPWAFPILRDEGYRYDSSLSPLPFVGDRRGPRG
PFRIDTPAGPLVEVPPLVTRTPLGNLPTGGGWGFRFFPLGLIGASVAGLNRRGMPAVLYVHPREVDPEGPRLALPPLRSF
VAYGPRSDAAPRLDALLERFSFTTLDQLVDRWDTV

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30500; Mature: 30369

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVLNALTIDVEDWYHVCGLPGEPVVSPDTERVVPAVGRLLALLARRGCRATFFLLGSVA
CCCCCEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
QRHPGLAPSIAEAGHEIASHGWSHRLVTGLSPEEFRTELRRTGDLLERQTGRRPVGFRAP
HHCCCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QWSLCRRRTPWAFPILRDEGYRYDSSLSPLPFVGDRRGPRGPFRIDTPAGPLVEVPPLVT
CHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCC
RTPLGNLPTGGGWGFRFFPLGLIGASVAGLNRRGMPAVLYVHPREVDPEGPRLALPPLRS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEECHHHHH
FVAYGPRSDAAPRLDALLERFSFTTLDQLVDRWDTV
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PVLNALTIDVEDWYHVCGLPGEPVVSPDTERVVPAVGRLLALLARRGCRATFFLLGSVA
CCCCEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
QRHPGLAPSIAEAGHEIASHGWSHRLVTGLSPEEFRTELRRTGDLLERQTGRRPVGFRAP
HHCCCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QWSLCRRRTPWAFPILRDEGYRYDSSLSPLPFVGDRRGPRGPFRIDTPAGPLVEVPPLVT
CHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCC
RTPLGNLPTGGGWGFRFFPLGLIGASVAGLNRRGMPAVLYVHPREVDPEGPRLALPPLRS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEECHHHHH
FVAYGPRSDAAPRLDALLERFSFTTLDQLVDRWDTV
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA