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The map label for this gene is 39995348

Identifier: 39995348

GI number: 39995348

Start: 245855

End: 247240

Strand: Reverse

Name: 39995348

Synonym: GSU0238

Alternate gene names: NA

Gene position: 247240-245855 (Counterclockwise)

Preceding gene: 39995349

Following gene: 39995347

Centisome position: 6.48

GC content: 69.05

Gene sequence:

>1386_bases
ATGAGGCTCCTCCTCGTGTCGGCAAACCGGGAGCGGAGCCCCTACCCGGTCTTTCCCCTGGGGCTCGCCTGCCTGGTCCC
GTCCCTGGAGGCGGCCGGCCACGAGCTCCGGGCCCTGGACCTCTGCTTCGAAGCCGATCCGGAGGAGGCCGTGACCGCGG
CTCTGGCGGATTTTACCCCCCAGGCCGTGATCATCTCCGTCCGCAACATCGACAACGTCACCTGGCCCGGCTCCCGCTCC
TACGTGGCCGGGGTCAAGGCCATCGTGGACCGCTGCCGGGGCATAGCCACCACCATCCTGGGGGGATCGGGCTTCTCCCT
CATGCCCGCCGAACTCCTCGCCTTCACCGGCGGTGACCTCGGCGTGGCGGGCGAGGGAGAGGAGATCCTGCCCGAGCTCC
TGGCCTGCATTGAGCGGGGCGAGTCCCCGGCGGGTTTGCCGGGAGTGGTGGCCGGCGCCGGGGCCTTTGCGCCGCCCCGG
CCGGTGGAGCGGATCGCCGCCCCGGACCGGCGCCTCTTCGCCCTGGCCCGCTACCGGCGGGAGGGGGGGATGGCCAACAT
CCAGACGAAGCGGGGATGCCCCTTCGGCTGCATCTACTGCACCTATCCGCTCCTGGAGGGACGGCGCATGCGGCTCCGGC
CGACGGCGGAGATCGTGGCCGAACTGCGGGAACTGGCCGATGCCGGCATCGACTACGTCTACTTCGTGGACGACATCTTC
AACTACCCTCCCGACTTTGCCGAGGAGCTCTGCCGGGCCATGATAGCCTCGGGTCTCACCATGGGCTGGTCGGCCTTCAT
AAACCCCCAGTTCATCACCCCGCGCCTCATGGAATCCATGGTGGCCGCCGGCTGCGACGCCGTGGAGTTCGGCACCGACT
CGGGCTCGCCAGCCATGCTCCGCAACCTGGGCAAGTCCTTCGGCGTGGCACAGATCCGGGAGTCGTCCCGCATCTGCCGC
GAGCTGGGGGTCGACTTTGCCCACTACATCCTCTTCGGCGGCCCCGGCGAAACCCCGGCGACCATTGCCGAGAGCTTCGC
CCTCATGGACGAGGTGGCCCCCACCGCGGTCATCGCCATGACCGGCATCCGGATCTTCCCCGGCACCCCCCTCTTCGAAC
GGGCCGTGGCCGAGGGGATGGTGACGCCGGATGAACCGCTCCTGGAACCGACCTTCTACCTGGCCCCCGCCATCAGGGAC
GTGCTGGGGGAACTCGTCACTGACGGGGCCATGACGCGGCGGAACTGGGTGGCGCCGGGACTGGAGATCAACATGAGCGA
CGCCATGCTGGAGGCCATGCGCCACTTCCCGGTGCGCGGTCCCCTGTGGAAACTGATCAAGCGGCTGGGACGGAGCCACG
CGAAACCGCTTTCCCAGCCTCAATAG

Upstream 100 bases:

>100_bases
CCGTTCACGCCCTCACCGACCGGGACGGGGTGCTCCAGTACCGCCTTCCCCCCGCAGTGGGCGAACGGCTGGAACGGCTG
CTCGCCTGGACGGAGGGGGC

Downstream 100 bases:

>100_bases
CCGCTGTAGGGGCACTTCACGAATTGCCCCTACAGTGAACGGCAGATTTCACGGAGGTTCTATGTCGGCAGCGGACGACC
TGATCGCATTCCTTGCCCCG

Product: radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MRLLLVSANRERSPYPVFPLGLACLVPSLEAAGHELRALDLCFEADPEEAVTAALADFTPQAVIISVRNIDNVTWPGSRS
YVAGVKAIVDRCRGIATTILGGSGFSLMPAELLAFTGGDLGVAGEGEEILPELLACIERGESPAGLPGVVAGAGAFAPPR
PVERIAAPDRRLFALARYRREGGMANIQTKRGCPFGCIYCTYPLLEGRRMRLRPTAEIVAELRELADAGIDYVYFVDDIF
NYPPDFAEELCRAMIASGLTMGWSAFINPQFITPRLMESMVAAGCDAVEFGTDSGSPAMLRNLGKSFGVAQIRESSRICR
ELGVDFAHYILFGGPGETPATIAESFALMDEVAPTAVIAMTGIRIFPGTPLFERAVAEGMVTPDEPLLEPTFYLAPAIRD
VLGELVTDGAMTRRNWVAPGLEINMSDAMLEAMRHFPVRGPLWKLIKRLGRSHAKPLSQPQ

Sequences:

>Translated_461_residues
MRLLLVSANRERSPYPVFPLGLACLVPSLEAAGHELRALDLCFEADPEEAVTAALADFTPQAVIISVRNIDNVTWPGSRS
YVAGVKAIVDRCRGIATTILGGSGFSLMPAELLAFTGGDLGVAGEGEEILPELLACIERGESPAGLPGVVAGAGAFAPPR
PVERIAAPDRRLFALARYRREGGMANIQTKRGCPFGCIYCTYPLLEGRRMRLRPTAEIVAELRELADAGIDYVYFVDDIF
NYPPDFAEELCRAMIASGLTMGWSAFINPQFITPRLMESMVAAGCDAVEFGTDSGSPAMLRNLGKSFGVAQIRESSRICR
ELGVDFAHYILFGGPGETPATIAESFALMDEVAPTAVIAMTGIRIFPGTPLFERAVAEGMVTPDEPLLEPTFYLAPAIRD
VLGELVTDGAMTRRNWVAPGLEINMSDAMLEAMRHFPVRGPLWKLIKRLGRSHAKPLSQPQ
>Mature_461_residues
MRLLLVSANRERSPYPVFPLGLACLVPSLEAAGHELRALDLCFEADPEEAVTAALADFTPQAVIISVRNIDNVTWPGSRS
YVAGVKAIVDRCRGIATTILGGSGFSLMPAELLAFTGGDLGVAGEGEEILPELLACIERGESPAGLPGVVAGAGAFAPPR
PVERIAAPDRRLFALARYRREGGMANIQTKRGCPFGCIYCTYPLLEGRRMRLRPTAEIVAELRELADAGIDYVYFVDDIF
NYPPDFAEELCRAMIASGLTMGWSAFINPQFITPRLMESMVAAGCDAVEFGTDSGSPAMLRNLGKSFGVAQIRESSRICR
ELGVDFAHYILFGGPGETPATIAESFALMDEVAPTAVIAMTGIRIFPGTPLFERAVAEGMVTPDEPLLEPTFYLAPAIRD
VLGELVTDGAMTRRNWVAPGLEINMSDAMLEAMRHFPVRGPLWKLIKRLGRSHAKPLSQPQ

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 49775; Mature: 49775

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLVSANRERSPYPVFPLGLACLVPSLEAAGHELRALDLCFEADPEEAVTAALADFTP
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCC
QAVIISVRNIDNVTWPGSRSYVAGVKAIVDRCRGIATTILGGSGFSLMPAELLAFTGGDL
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCC
GVAGEGEEILPELLACIERGESPAGLPGVVAGAGAFAPPRPVERIAAPDRRLFALARYRR
CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHH
EGGMANIQTKRGCPFGCIYCTYPLLEGRRMRLRPTAEIVAELRELADAGIDYVYFVDDIF
HCCCCCCCCCCCCCEEEHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCEEEEEHHHH
NYPPDFAEELCRAMIASGLTMGWSAFINPQFITPRLMESMVAAGCDAVEFGTDSGSPAML
CCCHHHHHHHHHHHHHCCCHHCHHHHCCCCCCCHHHHHHHHHCCCCCEECCCCCCCHHHH
RNLGKSFGVAQIRESSRICRELGVDFAHYILFGGPGETPATIAESFALMDEVAPTAVIAM
HHHHHHCCHHHHHHHHHHHHHHCCCHHHHEEECCCCCCHHHHHHHHHHHHHHCCHHHHHH
TGIRIFPGTPLFERAVAEGMVTPDEPLLEPTFYLAPAIRDVLGELVTDGAMTRRNWVAPG
HCCEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
LEINMSDAMLEAMRHFPVRGPLWKLIKRLGRSHAKPLSQPQ
CEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRLLLVSANRERSPYPVFPLGLACLVPSLEAAGHELRALDLCFEADPEEAVTAALADFTP
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCC
QAVIISVRNIDNVTWPGSRSYVAGVKAIVDRCRGIATTILGGSGFSLMPAELLAFTGGDL
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCC
GVAGEGEEILPELLACIERGESPAGLPGVVAGAGAFAPPRPVERIAAPDRRLFALARYRR
CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHH
EGGMANIQTKRGCPFGCIYCTYPLLEGRRMRLRPTAEIVAELRELADAGIDYVYFVDDIF
HCCCCCCCCCCCCCEEEHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCEEEEEHHHH
NYPPDFAEELCRAMIASGLTMGWSAFINPQFITPRLMESMVAAGCDAVEFGTDSGSPAML
CCCHHHHHHHHHHHHHCCCHHCHHHHCCCCCCCHHHHHHHHHCCCCCEECCCCCCCHHHH
RNLGKSFGVAQIRESSRICRELGVDFAHYILFGGPGETPATIAESFALMDEVAPTAVIAM
HHHHHHCCHHHHHHHHHHHHHHCCCHHHHEEECCCCCCHHHHHHHHHHHHHHCCHHHHHH
TGIRIFPGTPLFERAVAEGMVTPDEPLLEPTFYLAPAIRDVLGELVTDGAMTRRNWVAPG
HCCEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
LEINMSDAMLEAMRHFPVRGPLWKLIKRLGRSHAKPLSQPQ
CEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]