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The map label for this gene is erfK [H]

Identifier: 39995294

GI number: 39995294

Start: 196424

End: 197731

Strand: Reverse

Name: erfK [H]

Synonym: GSU0183

Alternate gene names: 39995294

Gene position: 197731-196424 (Counterclockwise)

Preceding gene: 39995296

Following gene: 39995293

Centisome position: 5.18

GC content: 63.38

Gene sequence:

>1308_bases
ATGCGCAGAATCGTTACGCTGCCAACCGTGGCCTACTGGCTTCGTTCCGCTGTCCTGGGCATCTGCGTCATTGCCCTCAC
GGGCTGTGCCGCCACCCGGCAAGCCTGGTTCTCACCGGTCCACCCTGAAAGCGAACTTGAACGGAACCGGTTCCAGGTTG
CGCCGGGAACTGACGTCATCGGCCGACTGGGGCTGGTCAAACTCGAAGAGGGGGATACGCTGCCGGATGTGGCGCGGCAC
TTCAGCGTGGGCATCAATGCCATCAGCGCAGCCAATCCGGGGGTTGATGTGTGGCTGCCCAAGGCAGGCCAACGCATTAC
CCTGCCCCTGAACTTCATCCTGCCGGATGCCCCCCGGAAGGGAATCGTGATCAACCTGGCCACCATGCGGCTCTTTCAGT
TCAAGGAAAACGGCGGAGCCCTGGCCGTGTCGACCTACCCGGTCGGAATCGGGACCAAGGAGCGGCCCACCCCCCAGGGA
CCGACACGCGTGGCGCGCAAGGCCAGCCGGCCGACCTGGTATGTGCCCGCCTCCATCGCCGAAGATCACCGGAAAAAGGG
GGACATTCTCCCTGCCCGGGTACCGCCGGGGCCGGAGAACCCCTTGGGAGACTACGCGCTCTATCTGAGCAGGTCGGGCT
ACCTGATCCACGGCACCAACAAACCGGCCAGCATCGGCCTGAAGGCATCCAATGGCTGCATGAGGCTCTATCCGGAACAT
ATCGAGGTGCTGTTCCGGGATACGGCGGTCAACACCCCGGTGCTCATAGTCAATCAGCCCTATCTCATCGGCCAGCGCGA
CGGCGTGCTCTACATGGAAGCCCACACCCCCCTGGAGGATTCGGGCACCAGTGAACTGGCCCGGATCCATGCGAAGCTGA
AATCCTTTGAAAGCGCATCGGCGCGAACGCTTGACTGGGACAAGATCAAACAAGTCCAGGCCGAGGCCCGGGGGATTCCC
GTCCCTATTCTGGAGCTGAGGCCGGGAGCGGAGCAAGAGGCGGCCTCGCCCCTGAGAATCGAGCACCCGGCAGCGCTGTA
TGGCAGGCCGGAGCTGCCGGCGCTCAAGCTGGACGCATGGTATGTCATGGTCGGCGACATGCGCGACGAAATGGAAGCCC
GGAGGATGGCCGCCATCATCAACCATCAGGGGCCGCCGATCCCGGCCCGGGTGCTGTCGAAGGATTCGAGCTACCGGATC
ATCGCCGGCCCGTTCAGTGACGACGGCAAGGCCAGGGATGCGGCCAAACGGTTGAAAATCGACCTTGACATAGACGGCAT
CGTGATCGAACCCGGCAGGACCATCTGA

Upstream 100 bases:

>100_bases
CTACAGGGTCTCACCGAGACAGCCGGGTTGCCGAACTATCACAGAATATTCGGCCCCGGCTTGTTTATTTTCATGAGACA
GAAAGGTACCCGTGTAACCC

Downstream 100 bases:

>100_bases
CCTGCCCCGCCCTATCGAACCGAAGGGAGGTGATGCGGGACAACGGGACGTCCCTCGGCAACCCTCGGAGTACACTACAC
AAACAGGAGGTATGTGTTAT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MRRIVTLPTVAYWLRSAVLGICVIALTGCAATRQAWFSPVHPESELERNRFQVAPGTDVIGRLGLVKLEEGDTLPDVARH
FSVGINAISAANPGVDVWLPKAGQRITLPLNFILPDAPRKGIVINLATMRLFQFKENGGALAVSTYPVGIGTKERPTPQG
PTRVARKASRPTWYVPASIAEDHRKKGDILPARVPPGPENPLGDYALYLSRSGYLIHGTNKPASIGLKASNGCMRLYPEH
IEVLFRDTAVNTPVLIVNQPYLIGQRDGVLYMEAHTPLEDSGTSELARIHAKLKSFESASARTLDWDKIKQVQAEARGIP
VPILELRPGAEQEAASPLRIEHPAALYGRPELPALKLDAWYVMVGDMRDEMEARRMAAIINHQGPPIPARVLSKDSSYRI
IAGPFSDDGKARDAAKRLKIDLDIDGIVIEPGRTI

Sequences:

>Translated_435_residues
MRRIVTLPTVAYWLRSAVLGICVIALTGCAATRQAWFSPVHPESELERNRFQVAPGTDVIGRLGLVKLEEGDTLPDVARH
FSVGINAISAANPGVDVWLPKAGQRITLPLNFILPDAPRKGIVINLATMRLFQFKENGGALAVSTYPVGIGTKERPTPQG
PTRVARKASRPTWYVPASIAEDHRKKGDILPARVPPGPENPLGDYALYLSRSGYLIHGTNKPASIGLKASNGCMRLYPEH
IEVLFRDTAVNTPVLIVNQPYLIGQRDGVLYMEAHTPLEDSGTSELARIHAKLKSFESASARTLDWDKIKQVQAEARGIP
VPILELRPGAEQEAASPLRIEHPAALYGRPELPALKLDAWYVMVGDMRDEMEARRMAAIINHQGPPIPARVLSKDSSYRI
IAGPFSDDGKARDAAKRLKIDLDIDGIVIEPGRTI
>Mature_435_residues
MRRIVTLPTVAYWLRSAVLGICVIALTGCAATRQAWFSPVHPESELERNRFQVAPGTDVIGRLGLVKLEEGDTLPDVARH
FSVGINAISAANPGVDVWLPKAGQRITLPLNFILPDAPRKGIVINLATMRLFQFKENGGALAVSTYPVGIGTKERPTPQG
PTRVARKASRPTWYVPASIAEDHRKKGDILPARVPPGPENPLGDYALYLSRSGYLIHGTNKPASIGLKASNGCMRLYPEH
IEVLFRDTAVNTPVLIVNQPYLIGQRDGVLYMEAHTPLEDSGTSELARIHAKLKSFESASARTLDWDKIKQVQAEARGIP
VPILELRPGAEQEAASPLRIEHPAALYGRPELPALKLDAWYVMVGDMRDEMEARRMAAIINHQGPPIPARVLSKDSSYRI
IAGPFSDDGKARDAAKRLKIDLDIDGIVIEPGRTI

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=262, Percent_Identity=38.5496183206107, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1787040, Length=230, Percent_Identity=40.8695652173913, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1787356, Length=264, Percent_Identity=36.7424242424242, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787968, Length=227, Percent_Identity=40.5286343612335, Blast_Score=156, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 47596; Mature: 47596

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRIVTLPTVAYWLRSAVLGICVIALTGCAATRQAWFSPVHPESELERNRFQVAPGTDVI
CCEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHCCCEEEECCCCHHH
GRLGLVKLEEGDTLPDVARHFSVGINAISAANPGVDVWLPKAGQRITLPLNFILPDAPRK
HCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCEEEECCCCCEEEEEEEEEECCCCCC
GIVINLATMRLFQFKENGGALAVSTYPVGIGTKERPTPQGPTRVARKASRPTWYVPASIA
CEEEEEEHEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEECCHHH
EDHRKKGDILPARVPPGPENPLGDYALYLSRSGYLIHGTNKPASIGLKASNGCMRLYPEH
HHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCEEEEEECCCEEEECHHH
IEVLFRDTAVNTPVLIVNQPYLIGQRDGVLYMEAHTPLEDSGTSELARIHAKLKSFESAS
HEEEECCCCCCCCEEEEECCEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
ARTLDWDKIKQVQAEARGIPVPILELRPGAEQEAASPLRIEHPAALYGRPELPALKLDAW
CCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHCCCCEEECCCHHHCCCCCCCEEEEEEE
YVMVGDMRDEMEARRMAAIINHQGPPIPARVLSKDSSYRIIAGPFSDDGKARDAAKRLKI
EEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHHEEE
DLDIDGIVIEPGRTI
EECCCCEEECCCCCC
>Mature Secondary Structure
MRRIVTLPTVAYWLRSAVLGICVIALTGCAATRQAWFSPVHPESELERNRFQVAPGTDVI
CCEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHCCCEEEECCCCHHH
GRLGLVKLEEGDTLPDVARHFSVGINAISAANPGVDVWLPKAGQRITLPLNFILPDAPRK
HCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCEEEECCCCCEEEEEEEEEECCCCCC
GIVINLATMRLFQFKENGGALAVSTYPVGIGTKERPTPQGPTRVARKASRPTWYVPASIA
CEEEEEEHEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEECCHHH
EDHRKKGDILPARVPPGPENPLGDYALYLSRSGYLIHGTNKPASIGLKASNGCMRLYPEH
HHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCEEEEEECCCEEEECHHH
IEVLFRDTAVNTPVLIVNQPYLIGQRDGVLYMEAHTPLEDSGTSELARIHAKLKSFESAS
HEEEECCCCCCCCEEEEECCEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
ARTLDWDKIKQVQAEARGIPVPILELRPGAEQEAASPLRIEHPAALYGRPELPALKLDAW
CCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHCCCCEEECCCHHHCCCCCCCEEEEEEE
YVMVGDMRDEMEARRMAAIINHQGPPIPARVLSKDSSYRIIAGPFSDDGKARDAAKRLKI
EEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHHEEE
DLDIDGIVIEPGRTI
EECCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]