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The map label for this gene is xp55 [H]

Identifier: 38234677

GI number: 38234677

Start: 2180480

End: 2182084

Strand: Reverse

Name: xp55 [H]

Synonym: DIP2128

Alternate gene names: 38234677

Gene position: 2182084-2180480 (Counterclockwise)

Preceding gene: 38234678

Following gene: 38234676

Centisome position: 87.68

GC content: 51.96

Gene sequence:

>1605_bases
ATGCGAAAACTGATATCTCTCACGCTTGCGTGCCTCGTCACCGGTTCCGTCGTTACTGCTTGCGGTGATCCAGGGCAATC
CGAAGCTTCCGGAGATCCCGGACATCCCACGCGACTCGTTCTAGCAGATCGAAAAGCTGGTGATGGATTCCACCCAGCTA
CCGGCTATGGACAAACTGGTGTGAGCCCCGTTTATGACGGACTGTTGCGTCCAGTATCAAACGGCCCAGAAAAGGTGCCA
AACTTTGTTCCTGCATTGGCTGCTGAAATGCCAACCTCGAACGCTGATGCTACAGAGTGGACCGTTAAGCTGCGCGAAGG
TGTGAAATTCACCGATGGTTCTGATTTCGATGCCGAGGATGTTAAAGCGTCCTATGCAATAGCTCGGGATTTGGAATCGG
GCTCACAAGTAGTTAGCCGCTACGACGTGATCAAAGACGTGGAAATAAAAGATCCACACACTGTGGTCTTCAAAATGACT
GTGCCGCTGGCCGAGATCCTATCCCGTATGACCTATGCGATCACACCCTCAGAACTTTTAACAAAAGGGTCGATTACAGA
GTCGAAACTGAATACGCATCCTGTAGGAACGGGCGCCTACGAGCTAGTAGAAAACCGTGGCGACGAAGTGGTCTTCAAAG
CCAACGAGAACTACTTCGAAGGTGCCCCAGAGGTCAAAGAGCTCGTTATCACGACCGCTGCAGACGACACCGCTCGCGCC
CAGCGCGTTGCCGCAGGTGAAATAGACGGTGCTGCGATCCCACCTAGCCAGCTCAAAGCCGTGGAAGGCAAGAAGGACCT
AGAAATTAATACCACGCATACTGCTGACTGGCGTGGCATCTCCTTTCCAAAGATTCCAGAAATCGCCGATCCTCGAGTCC
GCAAAGCACTGAACCTCGCTGTGGATCGCCAAGCGTTTGTCGACGGACCTCTCGGCGGACATGGAACAACCGTGTCAACG
CTGATTTCATCAATCTATGGTGATGCACATGATCCATCACTGGATTACAAGAAGGACATCGCTGCAGCGGAGAAGCTTCT
CGACGAAGCCGGCTGGGTGAAAAATTCCAACGGTGTGCGTGAGAAAGACGGAAAACCATTCCGTGTCGAGCTCTACTACG
CCGGAAGCGACACCGTGCGACGCGACATCGCTATCGAGTTTTCTTCTCAGATGAAAAAGCTGGGACTCGATTTCCCCACC
ATTGCAAGCACTTGGGATGAAATCGAAACCAAACTTGGTGATGTTTCCGTTGTCTTAGGTGGAGGATCAGCACCTTACGA
CCTGACCATTATGGCCTATGAATATCTGCATACTCGTACACCCTCCACTGGAAAGTGGGCGAACCCTGGTGACTACGGAT
CCGAAAAGCTAAATGCGTTGCTCGATCAAGCACGCAGCGAAGTAGACGTGGAAAAGCGCAACAACCTGTGGCGCAAGATT
CAAGCAGAATATGTGAACAACCCTTCAGCGCTGAATCTCGTCAACATCGATCACGTGTACGTGGGCAAGAAGAACGATTG
GAAGAAACCAGAACTTCTTCTTGAGCCTCACATCCACGGTGTGACCTGGGGTCCATGGTGGCGGATCTCGGAGTGGACAA
AATAA

Upstream 100 bases:

>100_bases
GTGAGGATTGCCTTAATTGTGAAAACGTTATTGAAAATGTTGTGCAGTGGTGTTAGGTTCGGTTCAATAAGGTTCTTCAT
ACTCATTGATCGGACAATAG

Downstream 100 bases:

>100_bases
GTGGCTGCGTTATTGCACCGTAGGGATAATCTCCACGGAGTCACCGCGATGGTGGGCTGGCGAATGCTCACCATCGCGGT
GACCACCGTGGTGGTTACGT

Product: putative substrate-binding transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MRKLISLTLACLVTGSVVTACGDPGQSEASGDPGHPTRLVLADRKAGDGFHPATGYGQTGVSPVYDGLLRPVSNGPEKVP
NFVPALAAEMPTSNADATEWTVKLREGVKFTDGSDFDAEDVKASYAIARDLESGSQVVSRYDVIKDVEIKDPHTVVFKMT
VPLAEILSRMTYAITPSELLTKGSITESKLNTHPVGTGAYELVENRGDEVVFKANENYFEGAPEVKELVITTAADDTARA
QRVAAGEIDGAAIPPSQLKAVEGKKDLEINTTHTADWRGISFPKIPEIADPRVRKALNLAVDRQAFVDGPLGGHGTTVST
LISSIYGDAHDPSLDYKKDIAAAEKLLDEAGWVKNSNGVREKDGKPFRVELYYAGSDTVRRDIAIEFSSQMKKLGLDFPT
IASTWDEIETKLGDVSVVLGGGSAPYDLTIMAYEYLHTRTPSTGKWANPGDYGSEKLNALLDQARSEVDVEKRNNLWRKI
QAEYVNNPSALNLVNIDHVYVGKKNDWKKPELLLEPHIHGVTWGPWWRISEWTK

Sequences:

>Translated_534_residues
MRKLISLTLACLVTGSVVTACGDPGQSEASGDPGHPTRLVLADRKAGDGFHPATGYGQTGVSPVYDGLLRPVSNGPEKVP
NFVPALAAEMPTSNADATEWTVKLREGVKFTDGSDFDAEDVKASYAIARDLESGSQVVSRYDVIKDVEIKDPHTVVFKMT
VPLAEILSRMTYAITPSELLTKGSITESKLNTHPVGTGAYELVENRGDEVVFKANENYFEGAPEVKELVITTAADDTARA
QRVAAGEIDGAAIPPSQLKAVEGKKDLEINTTHTADWRGISFPKIPEIADPRVRKALNLAVDRQAFVDGPLGGHGTTVST
LISSIYGDAHDPSLDYKKDIAAAEKLLDEAGWVKNSNGVREKDGKPFRVELYYAGSDTVRRDIAIEFSSQMKKLGLDFPT
IASTWDEIETKLGDVSVVLGGGSAPYDLTIMAYEYLHTRTPSTGKWANPGDYGSEKLNALLDQARSEVDVEKRNNLWRKI
QAEYVNNPSALNLVNIDHVYVGKKNDWKKPELLLEPHIHGVTWGPWWRISEWTK
>Mature_534_residues
MRKLISLTLACLVTGSVVTACGDPGQSEASGDPGHPTRLVLADRKAGDGFHPATGYGQTGVSPVYDGLLRPVSNGPEKVP
NFVPALAAEMPTSNADATEWTVKLREGVKFTDGSDFDAEDVKASYAIARDLESGSQVVSRYDVIKDVEIKDPHTVVFKMT
VPLAEILSRMTYAITPSELLTKGSITESKLNTHPVGTGAYELVENRGDEVVFKANENYFEGAPEVKELVITTAADDTARA
QRVAAGEIDGAAIPPSQLKAVEGKKDLEINTTHTADWRGISFPKIPEIADPRVRKALNLAVDRQAFVDGPLGGHGTTVST
LISSIYGDAHDPSLDYKKDIAAAEKLLDEAGWVKNSNGVREKDGKPFRVELYYAGSDTVRRDIAIEFSSQMKKLGLDFPT
IASTWDEIETKLGDVSVVLGGGSAPYDLTIMAYEYLHTRTPSTGKWANPGDYGSEKLNALLDQARSEVDVEKRNNLWRKI
QAEYVNNPSALNLVNIDHVYVGKKNDWKKPELLLEPHIHGVTWGPWWRISEWTK

Specific function: Required for transport of an unidentified substrate [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=275, Percent_Identity=32.7272727272727, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1789887, Length=485, Percent_Identity=26.5979381443299, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1789966, Length=381, Percent_Identity=26.246719160105, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787762, Length=480, Percent_Identity=22.7083333333333, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1789397, Length=426, Percent_Identity=26.2910798122066, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787551, Length=353, Percent_Identity=24.929178470255, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58262; Mature: 58262

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLISLTLACLVTGSVVTACGDPGQSEASGDPGHPTRLVLADRKAGDGFHPATGYGQTG
CHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
VSPVYDGLLRPVSNGPEKVPNFVPALAAEMPTSNADATEWTVKLREGVKFTDGSDFDAED
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHEEEEECCCCEECCCCCCCHHH
VKASYAIARDLESGSQVVSRYDVIKDVEIKDPHTVVFKMTVPLAEILSRMTYAITPSELL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHEEECCHHHHH
TKGSITESKLNTHPVGTGAYELVENRGDEVVFKANENYFEGAPEVKELVITTAADDTARA
HCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCHHHHEEEEECCCCHHHH
QRVAAGEIDGAAIPPSQLKAVEGKKDLEINTTHTADWRGISFPKIPEIADPRVRKALNLA
HHHHCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
VDRQAFVDGPLGGHGTTVSTLISSIYGDAHDPSLDYKKDIAAAEKLLDEAGWVKNSNGVR
HCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
EKDGKPFRVELYYAGSDTVRRDIAIEFSSQMKKLGLDFPTIASTWDEIETKLGDVSVVLG
CCCCCCEEEEEEECCCCCCHHHEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEE
GGSAPYDLTIMAYEYLHTRTPSTGKWANPGDYGSEKLNALLDQARSEVDVEKRNNLWRKI
CCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
QAEYVNNPSALNLVNIDHVYVGKKNDWKKPELLLEPHIHGVTWGPWWRISEWTK
HHHHCCCCCEEEEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRKLISLTLACLVTGSVVTACGDPGQSEASGDPGHPTRLVLADRKAGDGFHPATGYGQTG
CHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
VSPVYDGLLRPVSNGPEKVPNFVPALAAEMPTSNADATEWTVKLREGVKFTDGSDFDAED
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHEEEEECCCCEECCCCCCCHHH
VKASYAIARDLESGSQVVSRYDVIKDVEIKDPHTVVFKMTVPLAEILSRMTYAITPSELL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHEEECCHHHHH
TKGSITESKLNTHPVGTGAYELVENRGDEVVFKANENYFEGAPEVKELVITTAADDTARA
HCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCHHHHEEEEECCCCHHHH
QRVAAGEIDGAAIPPSQLKAVEGKKDLEINTTHTADWRGISFPKIPEIADPRVRKALNLA
HHHHCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
VDRQAFVDGPLGGHGTTVSTLISSIYGDAHDPSLDYKKDIAAAEKLLDEAGWVKNSNGVR
HCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
EKDGKPFRVELYYAGSDTVRRDIAIEFSSQMKKLGLDFPTIASTWDEIETKLGDVSVVLG
CCCCCCEEEEEEECCCCCCHHHEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEE
GGSAPYDLTIMAYEYLHTRTPSTGKWANPGDYGSEKLNALLDQARSEVDVEKRNNLWRKI
CCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
QAEYVNNPSALNLVNIDHVYVGKKNDWKKPELLLEPHIHGVTWGPWWRISEWTK
HHHHCCCCCEEEEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]