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The map label for this gene is ygbN [H]

Identifier: 38234636

GI number: 38234636

Start: 2129194

End: 2130531

Strand: Reverse

Name: ygbN [H]

Synonym: DIP2078

Alternate gene names: 38234636

Gene position: 2130531-2129194 (Counterclockwise)

Preceding gene: 38234637

Following gene: 38234635

Centisome position: 85.61

GC content: 53.66

Gene sequence:

>1338_bases
GTGACGGGCATGGCGCTCCTAGGACTCGGCGTCGTAGCAGTCGCGGTCCTTCTATTGCTCGTGATTTGGCTACGGGTACC
GGCCTTCGTGGCATTAATCGGTGTATCTATCGCCACGGCTTTGTGCTCCGGTGTCCCTTTAGGGGACGCGGTTTCCACCG
TTACCGACGGTGTTGGAAAAACGCTTGGATCAGTAATTGTCGTGGTCGGCCTTGGTGCCATGCTCGGCAAGATGATAGAG
GTATCCGGCGGCGCAGAGGCGGTTGCTCAATACTTTACGACCCGTCTTGGTCCCGCAAAAGTCGCCGGCGCGGTGACACT
TGCTGCGTTCATCCTAGGCATCCCCGTATTTTTCGACGTCGGATTCATTATTCTCGCGCCGATAATATTTGGATTTTCGG
CGGTAGCCAAGCAAAATCCTCTCAAGATCGGTCTGCCGGTTGCTGGCGCGTTGTTAACTGTCCATGTCACGCTTCCACCG
CACCCGGGACCAGTCGCGGTAGCTGGGGTCTTAGACTCGGATGTGGGCATGATGCTTACGTTTGGTTTGCCCATCGCGGC
AATCACTGCTGCGATCGGTTTCTTTGCAGCCAAGCTACTGAAAGTTGAGAAGATTGAGCGCGACAAGTCTCCAGTCGAGC
TCGAGGACACGGACCCGACTGGAGTGGCACCGTCGCCGTTTCTCATCCTCGGTCTGATCCTACTTCCGATTGTTCTGATC
ATGGTGGGAACTACCGGTGCGATGCTGACAAAAGAAGATACGACGGTGAATACTTTCGTAAGCTTCATTGGCAGCTCTCC
GGTCGCGCTCCTGATAGCTGTGATCGTTGCGTGGTTCTTCATCGGTCGCCAGCAGCATTGGAACCTCGAACGGGGAGCCA
GCGTCATGGATTCAGCGCTTCCGGCAGTGGCGGTCATTATTTTTGTCACTGGTGCTGGCGGTGGCTTCGCTAATGTTCTC
GTGAAATCCGGTATTGGAAAGGTTCTATCAGACATCCTTGTGAACGCACATATGCCGTTGATTCTCATGGCGTTCTTGCT
CTCGTTGGCACTTCGCGCGTCACAAGGATCCGCTACGGTAGCGATGCTTACAACGGCGGGTTTGATTAATCAGCCGATTA
TTGATGACGGTCTTAGCACTGCTCAGACTTCGTTGGTCATGTTGACAATCGGTTTTGGTGCTCTTGGTCTATCGCACATC
AATGACTCTGGTTTCTGGATTGTTACCAAGTACTTGGGAATGTCAGTGAAACAGGGGCTTAAGTCGTGGACGCTTCTTTC
GACTGTATTCGGAGTAACCGGATTCCTCCTGACGTGGGGCGTTTACGCCATCGTTTAA

Upstream 100 bases:

>100_bases
AACAGCAGTACCTCGCTGGCCTTGTCCGTGGACAAGGTGCTATGGATGATTCCTCAATTATCCGTATCGTGGCTCCGGCC
AAGGCGCAGGACGCATAACC

Downstream 100 bases:

>100_bases
GAGACCGGTAGATGCCTTTTACTTTTCGACGTCTACGACGAGATGGTCGACGGCGGTGTCGACTCGTGGATGGACGAGGA
AGCCCGTTCATCATCGACTT

Product: inner membrane permease YgbN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 444

Protein sequence:

>445_residues
MTGMALLGLGVVAVAVLLLLVIWLRVPAFVALIGVSIATALCSGVPLGDAVSTVTDGVGKTLGSVIVVVGLGAMLGKMIE
VSGGAEAVAQYFTTRLGPAKVAGAVTLAAFILGIPVFFDVGFIILAPIIFGFSAVAKQNPLKIGLPVAGALLTVHVTLPP
HPGPVAVAGVLDSDVGMMLTFGLPIAAITAAIGFFAAKLLKVEKIERDKSPVELEDTDPTGVAPSPFLILGLILLPIVLI
MVGTTGAMLTKEDTTVNTFVSFIGSSPVALLIAVIVAWFFIGRQQHWNLERGASVMDSALPAVAVIIFVTGAGGGFANVL
VKSGIGKVLSDILVNAHMPLILMAFLLSLALRASQGSATVAMLTTAGLINQPIIDDGLSTAQTSLVMLTIGFGALGLSHI
NDSGFWIVTKYLGMSVKQGLKSWTLLSTVFGVTGFLLTWGVYAIV

Sequences:

>Translated_445_residues
MTGMALLGLGVVAVAVLLLLVIWLRVPAFVALIGVSIATALCSGVPLGDAVSTVTDGVGKTLGSVIVVVGLGAMLGKMIE
VSGGAEAVAQYFTTRLGPAKVAGAVTLAAFILGIPVFFDVGFIILAPIIFGFSAVAKQNPLKIGLPVAGALLTVHVTLPP
HPGPVAVAGVLDSDVGMMLTFGLPIAAITAAIGFFAAKLLKVEKIERDKSPVELEDTDPTGVAPSPFLILGLILLPIVLI
MVGTTGAMLTKEDTTVNTFVSFIGSSPVALLIAVIVAWFFIGRQQHWNLERGASVMDSALPAVAVIIFVTGAGGGFANVL
VKSGIGKVLSDILVNAHMPLILMAFLLSLALRASQGSATVAMLTTAGLINQPIIDDGLSTAQTSLVMLTIGFGALGLSHI
NDSGFWIVTKYLGMSVKQGLKSWTLLSTVFGVTGFLLTWGVYAIV
>Mature_444_residues
TGMALLGLGVVAVAVLLLLVIWLRVPAFVALIGVSIATALCSGVPLGDAVSTVTDGVGKTLGSVIVVVGLGAMLGKMIEV
SGGAEAVAQYFTTRLGPAKVAGAVTLAAFILGIPVFFDVGFIILAPIIFGFSAVAKQNPLKIGLPVAGALLTVHVTLPPH
PGPVAVAGVLDSDVGMMLTFGLPIAAITAAIGFFAAKLLKVEKIERDKSPVELEDTDPTGVAPSPFLILGLILLPIVLIM
VGTTGAMLTKEDTTVNTFVSFIGSSPVALLIAVIVAWFFIGRQQHWNLERGASVMDSALPAVAVIIFVTGAGGGFANVLV
KSGIGKVLSDILVNAHMPLILMAFLLSLALRASQGSATVAMLTTAGLINQPIIDDGLSTAQTSLVMLTIGFGALGLSHIN
DSGFWIVTKYLGMSVKQGLKSWTLLSTVFGVTGFLLTWGVYAIV

Specific function: Unknown

COG id: COG2610

COG function: function code GE; H+/gluconate symporter and related permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gntP permease family [H]

Homologues:

Organism=Escherichia coli, GI1789097, Length=460, Percent_Identity=50.6521739130435, Blast_Score=400, Evalue=1e-113,
Organism=Escherichia coli, GI1790716, Length=435, Percent_Identity=32.183908045977, Blast_Score=231, Evalue=7e-62,
Organism=Escherichia coli, GI48994935, Length=430, Percent_Identity=32.7906976744186, Blast_Score=218, Evalue=9e-58,
Organism=Escherichia coli, GI1790776, Length=440, Percent_Identity=30.9090909090909, Blast_Score=203, Evalue=2e-53,
Organism=Escherichia coli, GI48994939, Length=441, Percent_Identity=34.2403628117914, Blast_Score=198, Evalue=5e-52,
Organism=Escherichia coli, GI1788707, Length=440, Percent_Identity=30.9090909090909, Blast_Score=195, Evalue=5e-51,
Organism=Escherichia coli, GI2367370, Length=426, Percent_Identity=33.0985915492958, Blast_Score=192, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003474 [H]

Pfam domain/function: PF02447 GntP_permease [H]

EC number: NA

Molecular weight: Translated: 45678; Mature: 45547

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGMALLGLGVVAVAVLLLLVIWLRVPAFVALIGVSIATALCSGVPLGDAVSTVTDGVGK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
TLGSVIVVVGLGAMLGKMIEVSGGAEAVAQYFTTRLGPAKVAGAVTLAAFILGIPVFFDV
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
GFIILAPIIFGFSAVAKQNPLKIGLPVAGALLTVHVTLPPHPGPVAVAGVLDSDVGMMLT
HHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEEEEECCCCCCEEEEEHHCCCCHHHHH
FGLPIAAITAAIGFFAAKLLKVEKIERDKSPVELEDTDPTGVAPSPFLILGLILLPIVLI
HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHH
MVGTTGAMLTKEDTTVNTFVSFIGSSPVALLIAVIVAWFFIGRQQHWNLERGASVMDSAL
HHCCCCCEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
PAVAVIIFVTGAGGGFANVLVKSGIGKVLSDILVNAHMPLILMAFLLSLALRASQGSATV
HHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEE
AMLTTAGLINQPIIDDGLSTAQTSLVMLTIGFGALGLSHINDSGFWIVTKYLGMSVKQGL
EHHHHHHHHCCCCHHCCCHHHHHHHEEEEECHHHHHHHHCCCCCCEEHHHHHHHHHHHHH
KSWTLLSTVFGVTGFLLTWGVYAIV
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TGMALLGLGVVAVAVLLLLVIWLRVPAFVALIGVSIATALCSGVPLGDAVSTVTDGVGK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
TLGSVIVVVGLGAMLGKMIEVSGGAEAVAQYFTTRLGPAKVAGAVTLAAFILGIPVFFDV
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
GFIILAPIIFGFSAVAKQNPLKIGLPVAGALLTVHVTLPPHPGPVAVAGVLDSDVGMMLT
HHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEEEEECCCCCCEEEEEHHCCCCHHHHH
FGLPIAAITAAIGFFAAKLLKVEKIERDKSPVELEDTDPTGVAPSPFLILGLILLPIVLI
HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHH
MVGTTGAMLTKEDTTVNTFVSFIGSSPVALLIAVIVAWFFIGRQQHWNLERGASVMDSAL
HHCCCCCEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
PAVAVIIFVTGAGGGFANVLVKSGIGKVLSDILVNAHMPLILMAFLLSLALRASQGSATV
HHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEE
AMLTTAGLINQPIIDDGLSTAQTSLVMLTIGFGALGLSHINDSGFWIVTKYLGMSVKQGL
EHHHHHHHHCCCCHHCCCHHHHHHHEEEEECHHHHHHHHCCCCCCEEHHHHHHHHHHHHH
KSWTLLSTVFGVTGFLLTWGVYAIV
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]