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The map label for this gene is ybdK [C]

Identifier: 38234599

GI number: 38234599

Start: 2090430

End: 2091509

Strand: Reverse

Name: ybdK [C]

Synonym: DIP2042

Alternate gene names: 38234599

Gene position: 2091509-2090430 (Counterclockwise)

Preceding gene: 38234600

Following gene: 38234593

Centisome position: 84.04

GC content: 58.52

Gene sequence:

>1080_bases
ATGATATTTCCGCCCTCGCCCCCAACCCTCGGCGTCGAATGGGAAGTAGCGCTTGCCGACCCGCACTCACGTGACCTTGT
ACCTCGTGGCCACGAGGTAATTGAGAAAGCCACCACGCATTTGGAACGAGAGTTCCTTGCCAACACAGTGGAGCTGGTGA
CCTCGGTATGCACCACCGTCCCCGAAGCCATTGAGGAGCTGCGCGAGGGCATTGAGGAAGTCAAAGCCATTGCAGCCGAC
ATGGGTTTGAAGGTGTGGGCTGCAGGCTCGCACCCCTTCTCGGACTTCCGCAAGCAGCCGGTGAACGAAAAAGGCCACTA
CAACGAGATTATCGAGCGCACTCAATACTGGGGTAACCAGATGCTGATCTGGGGTATTCATGTCCATGTGGGTATTTCCA
GCAAGGATCGCGTGTGGCCCATCATCAACGCCATGCTCACCTACTACCCGCACCTGTTGGCGTTGACTGCTTCCTCCCCA
GGCTGGGATGGCATTGATACTGGTTATGCCTCCAACCGCACCATGTTGTACCAGCAGCTGCCGACAGCAGGCCTGCCTTA
CCAGTTCCAGAGCTGGGATGAGTGGGAGGCGTACATGGCGGATCAGAATAAGTCCGGCGTGATTAACCACACCGGTTCTA
TGCATTTTGATATTCGCCCCACCCGCTATGGCACCGTGGAGGTCCGTATTTGCGACTCCACCAACCTGCGCGAACTTTCC
GCAGCCGTAGCACTGACGCACTGCCTGATCGTAGACCTCGAGCGCAAACTCGATCGTGGCGAGGAGCTCCCTACGCTGCA
GGATTGGCATGTTGCCGAGAACAAGTGGCGTGCTGCCCGCTATGGCATGGACGCGGAGATCATCATCTCCCGCGACACCG
ACGAGGCGTGGGTTACCGACGAGCTGCGCTCACTGGTGGAACGCCTCAGCCCGCTTGCCCGTGAGCTCGGCTGCTACGAC
GAACTCCAAGGCGTGCTCACCATTTGCCAGACGGGAGCCAGCTACCAGCGGCAGCGCGCTATTTACAAAGAAACAGGTTC
TTGGCTGCCGGTTGTCGACGCCGTCCTCGCCGAGATGTAA

Upstream 100 bases:

>100_bases
ACCCAGCCGGCCACCAAGCACAGGCACAAAAGATTGCAGATCAGCTGCATGCGGCTATCGCACAGCATGATAATCCCGAC
ATCGTAGTGGTTACAGTCCA

Downstream 100 bases:

>100_bases
CCCGCGATCGGGCTGATGATCGCATAGCCTGCGACGAACACCAAGCCCGATACGCAGAACCAGTCTTTGAACCAGTCGTG
GAAAAACAGCAGGTGCGGGG

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MIFPPSPPTLGVEWEVALADPHSRDLVPRGHEVIEKATTHLEREFLANTVELVTSVCTTVPEAIEELREGIEEVKAIAAD
MGLKVWAAGSHPFSDFRKQPVNEKGHYNEIIERTQYWGNQMLIWGIHVHVGISSKDRVWPIINAMLTYYPHLLALTASSP
GWDGIDTGYASNRTMLYQQLPTAGLPYQFQSWDEWEAYMADQNKSGVINHTGSMHFDIRPTRYGTVEVRICDSTNLRELS
AAVALTHCLIVDLERKLDRGEELPTLQDWHVAENKWRAARYGMDAEIIISRDTDEAWVTDELRSLVERLSPLARELGCYD
ELQGVLTICQTGASYQRQRAIYKETGSWLPVVDAVLAEM

Sequences:

>Translated_359_residues
MIFPPSPPTLGVEWEVALADPHSRDLVPRGHEVIEKATTHLEREFLANTVELVTSVCTTVPEAIEELREGIEEVKAIAAD
MGLKVWAAGSHPFSDFRKQPVNEKGHYNEIIERTQYWGNQMLIWGIHVHVGISSKDRVWPIINAMLTYYPHLLALTASSP
GWDGIDTGYASNRTMLYQQLPTAGLPYQFQSWDEWEAYMADQNKSGVINHTGSMHFDIRPTRYGTVEVRICDSTNLRELS
AAVALTHCLIVDLERKLDRGEELPTLQDWHVAENKWRAARYGMDAEIIISRDTDEAWVTDELRSLVERLSPLARELGCYD
ELQGVLTICQTGASYQRQRAIYKETGSWLPVVDAVLAEM
>Mature_359_residues
MIFPPSPPTLGVEWEVALADPHSRDLVPRGHEVIEKATTHLEREFLANTVELVTSVCTTVPEAIEELREGIEEVKAIAAD
MGLKVWAAGSHPFSDFRKQPVNEKGHYNEIIERTQYWGNQMLIWGIHVHVGISSKDRVWPIINAMLTYYPHLLALTASSP
GWDGIDTGYASNRTMLYQQLPTAGLPYQFQSWDEWEAYMADQNKSGVINHTGSMHFDIRPTRYGTVEVRICDSTNLRELS
AAVALTHCLIVDLERKLDRGEELPTLQDWHVAENKWRAARYGMDAEIIISRDTDEAWVTDELRSLVERLSPLARELGCYD
ELQGVLTICQTGASYQRQRAIYKETGSWLPVVDAVLAEM

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=360, Percent_Identity=27.2222222222222, Blast_Score=143, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_CORDI (Q6NF59)

Other databases:

- EMBL:   BX248360
- RefSeq:   NP_940366.1
- ProteinModelPortal:   Q6NF59
- SMR:   Q6NF59
- GeneID:   2650141
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP2042
- NMPDR:   fig|257309.1.peg.1957
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- PhylomeDB:   Q6NF59
- ProtClustDB:   PRK13517
- BioCyc:   CDIP257309:DIP2042-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 40662; Mature: 40662

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFPPSPPTLGVEWEVALADPHSRDLVPRGHEVIEKATTHLEREFLANTVELVTSVCTTV
CCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PEAIEELREGIEEVKAIAADMGLKVWAAGSHPFSDFRKQPVNEKGHYNEIIERTQYWGNQ
HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCE
MLIWGIHVHVGISSKDRVWPIINAMLTYYPHLLALTASSPGWDGIDTGYASNRTMLYQQL
EEEEEEEEEEECCCCCCHHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCCCCEEEHHHC
PTAGLPYQFQSWDEWEAYMADQNKSGVINHTGSMHFDIRPTRYGTVEVRICDSTNLRELS
CCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCEEEEECCCEECEEEEEECCCCCHHHHH
AAVALTHCLIVDLERKLDRGEELPTLQDWHVAENKWRAARYGMDAEIIISRDTDEAWVTD
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
ELRSLVERLSPLARELGCYDELQGVLTICQTGASYQRQRAIYKETGSWLPVVDAVLAEM
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MIFPPSPPTLGVEWEVALADPHSRDLVPRGHEVIEKATTHLEREFLANTVELVTSVCTTV
CCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PEAIEELREGIEEVKAIAADMGLKVWAAGSHPFSDFRKQPVNEKGHYNEIIERTQYWGNQ
HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCE
MLIWGIHVHVGISSKDRVWPIINAMLTYYPHLLALTASSPGWDGIDTGYASNRTMLYQQL
EEEEEEEEEEECCCCCCHHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCCCCEEEHHHC
PTAGLPYQFQSWDEWEAYMADQNKSGVINHTGSMHFDIRPTRYGTVEVRICDSTNLRELS
CCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCEEEEECCCEECEEEEEECCCCCHHHHH
AAVALTHCLIVDLERKLDRGEELPTLQDWHVAENKWRAARYGMDAEIIISRDTDEAWVTD
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
ELRSLVERLSPLARELGCYDELQGVLTICQTGASYQRQRAIYKETGSWLPVVDAVLAEM
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 14602910