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The map label for this gene is rnaSA [H]

Identifier: 38234272

GI number: 38234272

Start: 1739962

End: 1740420

Strand: Direct

Name: rnaSA [H]

Synonym: DIP1701

Alternate gene names: 38234272

Gene position: 1739962-1740420 (Clockwise)

Preceding gene: 38234269

Following gene: 38234273

Centisome position: 69.92

GC content: 53.16

Gene sequence:

>459_bases
ATGTCTGGTGCGAAATCTACGCCTTATCATAAAAAACCACAGTCGCTGGTTGCCGCCATTGCAGGTCTTGCCATAGCAGT
TGCCGCTGGATACTTCGGCCTGCAGCCTTCTCAGGACTCACCTGAGCAGGCACCAGCCACCTCTGCTATCCGGCCTCACG
AGGACGAATGTCCTGTGGAATCCTTACCACCGCAGGTAAAAGATACGATCGCGGATATTACTGCGGGCGGTCCGTTTGAT
TACCCAGACAATGACGGTGTGCGCTTTGGCAATTATGAGGGGCATTTACCGCGAAAGGATCGCAATTTTTATCGTGAGTA
CACGGTAGAAACCCCAGGTCTGCGTCATCGCGGTGAGCGCCGCATTATTACGGGTGGCGGTTCTAAGACGAGCCCGCAGC
AATGGTATTACACCGATGACCATTACGAGAGTTTCTGTGAGATCCCTAATGCCCACTAG

Upstream 100 bases:

>100_bases
TTCCACACATACATCGCACTATATTGCATTCTTTGTGCTAGTGCAGTTTCTGCAGCTAGTAGGTCAGCATCTCATTCTTT
GATGTGCGACAATGGTGCTC

Downstream 100 bases:

>100_bases
TATTTCTGTTTCTCGTATCCGCAGCCTCGACGAGTTTTACGCGAGTGTGATGGCCCAGTTAGAGCCTTCTCGCAGTGCAC
CACGCAACCTTGATGGGCTG

Product: putative ribonuclease

Products: NA

Alternate protein names: RNase Sa [H]

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MSGAKSTPYHKKPQSLVAAIAGLAIAVAAGYFGLQPSQDSPEQAPATSAIRPHEDECPVESLPPQVKDTIADITAGGPFD
YPDNDGVRFGNYEGHLPRKDRNFYREYTVETPGLRHRGERRIITGGGSKTSPQQWYYTDDHYESFCEIPNAH

Sequences:

>Translated_152_residues
MSGAKSTPYHKKPQSLVAAIAGLAIAVAAGYFGLQPSQDSPEQAPATSAIRPHEDECPVESLPPQVKDTIADITAGGPFD
YPDNDGVRFGNYEGHLPRKDRNFYREYTVETPGLRHRGERRIITGGGSKTSPQQWYYTDDHYESFCEIPNAH
>Mature_151_residues
SGAKSTPYHKKPQSLVAAIAGLAIAVAAGYFGLQPSQDSPEQAPATSAIRPHEDECPVESLPPQVKDTIADITAGGPFDY
PDNDGVRFGNYEGHLPRKDRNFYREYTVETPGLRHRGERRIITGGGSKTSPQQWYYTDDHYESFCEIPNAH

Specific function: Unknown

COG id: COG4290

COG function: function code F; Guanyl-specific ribonuclease Sa

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonuclease N1/T1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000026
- InterPro:   IPR016191 [H]

Pfam domain/function: PF00545 Ribonuclease [H]

EC number: =3.1.27.3 [H]

Molecular weight: Translated: 16750; Mature: 16618

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGAKSTPYHKKPQSLVAAIAGLAIAVAAGYFGLQPSQDSPEQAPATSAIRPHEDECPVE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SLPPQVKDTIADITAGGPFDYPDNDGVRFGNYEGHLPRKDRNFYREYTVETPGLRHRGER
CCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCE
RIITGGGSKTSPQQWYYTDDHYESFCEIPNAH
EEEECCCCCCCCCCEEEECHHHHHHHCCCCCC
>Mature Secondary Structure 
SGAKSTPYHKKPQSLVAAIAGLAIAVAAGYFGLQPSQDSPEQAPATSAIRPHEDECPVE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SLPPQVKDTIADITAGGPFDYPDNDGVRFGNYEGHLPRKDRNFYREYTVETPGLRHRGER
CCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCE
RIITGGGSKTSPQQWYYTDDHYESFCEIPNAH
EEEECCCCCCCCCCEEEECHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3098582; 3118883; 1654932; 8396032; 9757110; 9819211; 11455593 [H]