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The map label for this gene is ydfH [C]

Identifier: 38234235

GI number: 38234235

Start: 1698485

End: 1699168

Strand: Direct

Name: ydfH [C]

Synonym: DIP1662

Alternate gene names: 38234235

Gene position: 1698485-1699168 (Clockwise)

Preceding gene: 38234230

Following gene: 38234236

Centisome position: 68.25

GC content: 52.19

Gene sequence:

>684_bases
ATGTCGTATTCACAGCATGATCCTCATGTCGCAGCACTCTTGGATCACACATCCGAGTTGCCCGCCGCCGAGCGCGCCTA
TCTCTATCTAAAACAACAGATCACTCACGGCCACCTCAGCGACAATGACATGATCAGTGAAGGCGACATAGGCAAAGTAC
TCAGTTTGAGCCGCACGCCTGTACGTGAAGCATTTCTCAGGCTAGAAACCGAAGGGTTCTTGCGTCTCTATCCAAAACGT
GGCGCCTTGATCGTGCCACTCGGAGCAGAAGACATCCGCGACATTTACGAGTCCCGTTACCTCATCGAGGCTCACTCAGC
CCAAAAAGTTGCGCAACTACCAAGCGCACAACGCACGGCGATCGTCGCAGCGCTAGAAGCCACCATCGAAAAGCAAGAAG
AGGCCTTAAGCCGCGAACGACTCGACCTCTATACCGACTTCGACGCAGAGTTTCATCAACACATCATGAAAGCTGCTGGC
AACGAAATTCTGGCGCACCTCTACAACAGCTTGCGGGATAAACAAGCACGCATCACCTCACGTATCGTGACCCGCAACGC
TGACAACGCCCAAGTGTTTGTCCAAGGCCATAAACAACTAACTTTGGCAATCCGCGACGGCAATAGCGACACCTACCAAC
AGGTTCTTTCTGAACACCTTGCCACTTCGCAACATCAGTTTTAA

Upstream 100 bases:

>100_bases
TAATAGCTGGATAGAAATTACCCCCGCACCCTGTACGTATTAAAACACCAGTTGATCATCAACACTTGTGTTGGATCCAT
GTTAGATCTAACTTGTATCT

Downstream 100 bases:

>100_bases
CGACACACAGTAAGAAGAGCTATGCCTCAAAAGCAGCAATCGGCCGTGCATCCACGCGACTGGTTCCCAGTAGCAGCCAC
AATGATCGCCATCGCTTGGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORFX [H]

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSYSQHDPHVAALLDHTSELPAAERAYLYLKQQITHGHLSDNDMISEGDIGKVLSLSRTPVREAFLRLETEGFLRLYPKR
GALIVPLGAEDIRDIYESRYLIEAHSAQKVAQLPSAQRTAIVAALEATIEKQEEALSRERLDLYTDFDAEFHQHIMKAAG
NEILAHLYNSLRDKQARITSRIVTRNADNAQVFVQGHKQLTLAIRDGNSDTYQQVLSEHLATSQHQF

Sequences:

>Translated_227_residues
MSYSQHDPHVAALLDHTSELPAAERAYLYLKQQITHGHLSDNDMISEGDIGKVLSLSRTPVREAFLRLETEGFLRLYPKR
GALIVPLGAEDIRDIYESRYLIEAHSAQKVAQLPSAQRTAIVAALEATIEKQEEALSRERLDLYTDFDAEFHQHIMKAAG
NEILAHLYNSLRDKQARITSRIVTRNADNAQVFVQGHKQLTLAIRDGNSDTYQQVLSEHLATSQHQF
>Mature_226_residues
SYSQHDPHVAALLDHTSELPAAERAYLYLKQQITHGHLSDNDMISEGDIGKVLSLSRTPVREAFLRLETEGFLRLYPKRG
ALIVPLGAEDIRDIYESRYLIEAHSAQKVAQLPSAQRTAIVAALEATIEKQEEALSRERLDLYTDFDAEFHQHIMKAAGN
EILAHLYNSLRDKQARITSRIVTRNADNAQVFVQGHKQLTLAIRDGNSDTYQQVLSEHLATSQHQF

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=200, Percent_Identity=22.5, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25656; Mature: 25525

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSQHDPHVAALLDHTSELPAAERAYLYLKQQITHGHLSDNDMISEGDIGKVLSLSRTP
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCH
VREAFLRLETEGFLRLYPKRGALIVPLGAEDIRDIYESRYLIEAHSAQKVAQLPSAQRTA
HHHHHHHHCCCCEEEEECCCCCEEEEECHHHHHHHHHCCEEEEHHHHHHHHHCCCHHHHH
IVAALEATIEKQEEALSRERLDLYTDFDAEFHQHIMKAAGNEILAHLYNSLRDKQARITS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIVTRNADNAQVFVQGHKQLTLAIRDGNSDTYQQVLSEHLATSQHQF
HHHHCCCCCCEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SYSQHDPHVAALLDHTSELPAAERAYLYLKQQITHGHLSDNDMISEGDIGKVLSLSRTP
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCH
VREAFLRLETEGFLRLYPKRGALIVPLGAEDIRDIYESRYLIEAHSAQKVAQLPSAQRTA
HHHHHHHHCCCCEEEEECCCCCEEEEECHHHHHHHHHCCEEEEHHHHHHHHHCCCHHHHH
IVAALEATIEKQEEALSRERLDLYTDFDAEFHQHIMKAAGNEILAHLYNSLRDKQARITS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIVTRNADNAQVFVQGHKQLTLAIRDGNSDTYQQVLSEHLATSQHQF
HHHHCCCCCCEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8672817 [H]