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The map label for this gene is rimM

Identifier: 38234108

GI number: 38234108

Start: 1552581

End: 1553081

Strand: Reverse

Name: rimM

Synonym: DIP1531

Alternate gene names: 38234108

Gene position: 1553081-1552581 (Counterclockwise)

Preceding gene: 38234109

Following gene: 38234107

Centisome position: 62.41

GC content: 47.5

Gene sequence:

>501_bases
ATGGAATTAATGATTGGTCGTGTGGTGAAATCCCATGGTATTCGTGGTGAGGTTGCCATTGAGGTAACTACGGAAGAACC
AGAGATTCGGTTCGCGCAGGGTGAAGTTCTCAACGGGCGGCAAGGCGGGAAAGAACATTCCCTCACAATTGCATCTGTGC
GACCACATCAAAATCGACTTCTCGTGAAATTTAAAGAAATTGCCGATCGTACTGCTGCTGATAGCCTACGGGGTACGCGC
TTTTTCGCAGCTCCACTCGATGACGATGTCGACGATGGATTCTATGACCATGAGCTAGAAGGTCTAGCAGTTATCCACGG
AGAAGAGAAAATTGGTGAAGTATCCGGAGTTATACATGGGCCAGCTCAATCACTTTTAGAAGTAACCCTTGAAAGTGGTA
AAGAGGTTCTTATTCCATTCGTCCACGATATCGTTCCCGAAGTTGATCTTGACGCTGGAACGTGTGTGATTACTCCACCG
GAAGGGCTGCTGGAACTCTAA

Upstream 100 bases:

>100_bases
TGATCCTACCTGCGGGTAGGGGAAGTATCGTGGGGTTTTCTCATATCATTACGAGGTTTGAGATTCTGAAGATTGCTGGC
ATGCGGTAGCCTTAGATCTC

Downstream 100 bases:

>100_bases
TGAGACTTGATGTCATCACAATTTTCCCTGAATATCTTGATCCGCTAAGACACGCACTTTTAGGGAAAGCGATCGAGAAA
GATTTGCTTAGTGTCGGTGT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MELMIGRVVKSHGIRGEVAIEVTTEEPEIRFAQGEVLNGRQGGKEHSLTIASVRPHQNRLLVKFKEIADRTAADSLRGTR
FFAAPLDDDVDDGFYDHELEGLAVIHGEEKIGEVSGVIHGPAQSLLEVTLESGKEVLIPFVHDIVPEVDLDAGTCVITPP
EGLLEL

Sequences:

>Translated_166_residues
MELMIGRVVKSHGIRGEVAIEVTTEEPEIRFAQGEVLNGRQGGKEHSLTIASVRPHQNRLLVKFKEIADRTAADSLRGTR
FFAAPLDDDVDDGFYDHELEGLAVIHGEEKIGEVSGVIHGPAQSLLEVTLESGKEVLIPFVHDIVPEVDLDAGTCVITPP
EGLLEL
>Mature_166_residues
MELMIGRVVKSHGIRGEVAIEVTTEEPEIRFAQGEVLNGRQGGKEHSLTIASVRPHQNRLLVKFKEIADRTAADSLRGTR
FFAAPLDDDVDDGFYDHELEGLAVIHGEEKIGEVSGVIHGPAQSLLEVTLESGKEVLIPFVHDIVPEVDLDAGTCVITPP
EGLLEL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_CORDI (Q6NGI4)

Other databases:

- EMBL:   BX248358
- RefSeq:   NP_939875.1
- ProteinModelPortal:   Q6NGI4
- SMR:   Q6NGI4
- GeneID:   2650721
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP1531
- NMPDR:   fig|257309.1.peg.1466
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK00122
- BioCyc:   CDIP257309:DIP1531-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18068; Mature: 18068

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELMIGRVVKSHGIRGEVAIEVTTEEPEIRFAQGEVLNGRQGGKEHSLTIASVRPHQNRL
CCCHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCEECCCCCCCCCEEEEEEECCCCCEE
LVKFKEIADRTAADSLRGTRFFAAPLDDDVDDGFYDHELEGLAVIHGEEKIGEVSGVIHG
EEEEHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCEEEC
PAQSLLEVTLESGKEVLIPFVHDIVPEVDLDAGTCVITPPEGLLEL
HHHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCEEEEECCHHHHCC
>Mature Secondary Structure
MELMIGRVVKSHGIRGEVAIEVTTEEPEIRFAQGEVLNGRQGGKEHSLTIASVRPHQNRL
CCCHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCEECCCCCCCCCEEEEEEECCCCCEE
LVKFKEIADRTAADSLRGTRFFAAPLDDDVDDGFYDHELEGLAVIHGEEKIGEVSGVIHG
EEEEHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCEEEC
PAQSLLEVTLESGKEVLIPFVHDIVPEVDLDAGTCVITPPEGLLEL
HHHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCEEEEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910