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The map label for this gene is ydiU [C]

Identifier: 38234066

GI number: 38234066

Start: 1506045

End: 1507391

Strand: Direct

Name: ydiU [C]

Synonym: DIP1485

Alternate gene names: 38234066

Gene position: 1506045-1507391 (Clockwise)

Preceding gene: 38234064

Following gene: 38234072

Centisome position: 60.52

GC content: 49.81

Gene sequence:

>1347_bases
ATGCCACTTACCTTTGCTCACTCCTTCGCCGATGCTGTTCCCTCTTTATCAGTCCCATGGCGCGCTGAGCAGTGGCCTGA
TCCGCGTATTATCGTGTTTAATCACGAACTCGGCCAAGAATTAGGAATTGATGAGGCCTCCCTTCTTTCGAACATTACGC
AACAAGGACATGCCCAAGCCTACTCAGGGCACCAATTCGGCCAGTTCAATCCATTACTCGGAGACGGTCGCGCGCTCGTT
CTAGGTGATTGTGCACAAACAAATGCACCACATGGTCAGTTCGAAATTTCTTTGAAAGGATCCGGCCCGACCCCATTTGC
GCGCCGGGGCGACGGACGCGCAACCCTTGGCCCCATGTTGAGGGAATATCTTATTTCCGAAGCACTCCACGGCTTAGGGA
TTCCCACGACACGATCTCTCGCCGTTATTACAACTGGTACCGATGTCCAACGCGAACGCTTGTTACCCGGCGCGGTTGTC
GTAAGAGTCGCACAAAATCATCTTCGTGTGGGAAGCGTGCAATGTGCTGCAATGCGTGACGACGATTCATTGGCAGCGTT
GGTTCGTTATGCCTTGTCGTCTCATGAGGATGGTGTCAGTGATGCGGAGGCTGCTGGATTATTGTTGCGGCGTGTGAGTA
CGTCTCAAGCGAAGTTAGTAGCGCAGTGGATGCGCTTTGGGTTTGTGCATGGTGTGATGAATACCGATAATGTGACTCTT
TCTGGGCAAACCATTGATTTTGGACCGTGCGCTTTTATTGATTCTTTTCATCCTCAAGCGGTCTTTTCGAGTATTGACTC
CCATGGTCGATATTCATTTGGCCGTCAGCCAAGCATCATGGGGTGGAATATCGCTCGGTTGGCAGAAGCTCTTTTACCAC
TCATGTCTATTGATGAGGCTCGCAATATTGTCCATGAGTTTCCGGATATGTATCGTCGTTCTTGGCTTGATGAGATGGCT
GATGCAGTTGGTATTAGTCCAGATGATGATCACGCTGCCGGTGTGCTTGATGATTTGGTGGCTTTATTAGATGTTCATCG
TCCGGATTACGCGCAATTCATGCGGAGTCTGAGTGATGGAACGACTGTTTCTCTTTTCCCTTGGGCGCAGCAATGGGAGG
CAGAGGTTTCTTCGCTACGTGTAGCAGCTCCTCGTAATCCGGTCTATGTTCCTCGGAATTATCTCGTAGAAGATGCTCTT
GAGCACGCTATGAATGCGGATATGTCTGTGTTCTCTTTACTTGTGGAGGCTGGGAAAAACCCTTATCTTCGAGAGAAGCG
ATTTGAAAAATTGGAGAATCCTGCCCCTGAAACGTGGCAGGATTATGTGACTTATTGTGGCACTTAG

Upstream 100 bases:

>100_bases
AGCGGTCCACGATTCTGAAGACGAAAACATACCTGCCAGTTTAAACAGCTTCCTATTCCGGCTTGAAATCTCCGTGAATT
TTTTCATTATCCTGTAAACC

Downstream 100 bases:

>100_bases
GCGCTAGCTCTTGGCTGCATCGGCGGTGCTCAGCAGTTGTTGTACTTCGGAATCGCTGAGCATGGCGTCATTGAGAAGTT
GCTGGGCTTGAGCGTGATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MPLTFAHSFADAVPSLSVPWRAEQWPDPRIIVFNHELGQELGIDEASLLSNITQQGHAQAYSGHQFGQFNPLLGDGRALV
LGDCAQTNAPHGQFEISLKGSGPTPFARRGDGRATLGPMLREYLISEALHGLGIPTTRSLAVITTGTDVQRERLLPGAVV
VRVAQNHLRVGSVQCAAMRDDDSLAALVRYALSSHEDGVSDAEAAGLLLRRVSTSQAKLVAQWMRFGFVHGVMNTDNVTL
SGQTIDFGPCAFIDSFHPQAVFSSIDSHGRYSFGRQPSIMGWNIARLAEALLPLMSIDEARNIVHEFPDMYRRSWLDEMA
DAVGISPDDDHAAGVLDDLVALLDVHRPDYAQFMRSLSDGTTVSLFPWAQQWEAEVSSLRVAAPRNPVYVPRNYLVEDAL
EHAMNADMSVFSLLVEAGKNPYLREKRFEKLENPAPETWQDYVTYCGT

Sequences:

>Translated_448_residues
MPLTFAHSFADAVPSLSVPWRAEQWPDPRIIVFNHELGQELGIDEASLLSNITQQGHAQAYSGHQFGQFNPLLGDGRALV
LGDCAQTNAPHGQFEISLKGSGPTPFARRGDGRATLGPMLREYLISEALHGLGIPTTRSLAVITTGTDVQRERLLPGAVV
VRVAQNHLRVGSVQCAAMRDDDSLAALVRYALSSHEDGVSDAEAAGLLLRRVSTSQAKLVAQWMRFGFVHGVMNTDNVTL
SGQTIDFGPCAFIDSFHPQAVFSSIDSHGRYSFGRQPSIMGWNIARLAEALLPLMSIDEARNIVHEFPDMYRRSWLDEMA
DAVGISPDDDHAAGVLDDLVALLDVHRPDYAQFMRSLSDGTTVSLFPWAQQWEAEVSSLRVAAPRNPVYVPRNYLVEDAL
EHAMNADMSVFSLLVEAGKNPYLREKRFEKLENPAPETWQDYVTYCGT
>Mature_447_residues
PLTFAHSFADAVPSLSVPWRAEQWPDPRIIVFNHELGQELGIDEASLLSNITQQGHAQAYSGHQFGQFNPLLGDGRALVL
GDCAQTNAPHGQFEISLKGSGPTPFARRGDGRATLGPMLREYLISEALHGLGIPTTRSLAVITTGTDVQRERLLPGAVVV
RVAQNHLRVGSVQCAAMRDDDSLAALVRYALSSHEDGVSDAEAAGLLLRRVSTSQAKLVAQWMRFGFVHGVMNTDNVTLS
GQTIDFGPCAFIDSFHPQAVFSSIDSHGRYSFGRQPSIMGWNIARLAEALLPLMSIDEARNIVHEFPDMYRRSWLDEMAD
AVGISPDDDHAAGVLDDLVALLDVHRPDYAQFMRSLSDGTTVSLFPWAQQWEAEVSSLRVAAPRNPVYVPRNYLVEDALE
HAMNADMSVFSLLVEAGKNPYLREKRFEKLENPAPETWQDYVTYCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=295, Percent_Identity=37.6271186440678, Blast_Score=197, Evalue=2e-50,
Organism=Escherichia coli, GI1787999, Length=456, Percent_Identity=32.8947368421053, Blast_Score=234, Evalue=1e-62,
Organism=Saccharomyces cerevisiae, GI6325034, Length=293, Percent_Identity=34.4709897610922, Blast_Score=161, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 49312; Mature: 49181

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTFAHSFADAVPSLSVPWRAEQWPDPRIIVFNHELGQELGIDEASLLSNITQQGHAQA
CCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHHCCHHH
YSGHQFGQFNPLLGDGRALVLGDCAQTNAPHGQFEISLKGSGPTPFARRGDGRATLGPML
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
REYLISEALHGLGIPTTRSLAVITTGTDVQRERLLPGAVVVRVAQNHLRVGSVQCAAMRD
HHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECC
DDSLAALVRYALSSHEDGVSDAEAAGLLLRRVSTSQAKLVAQWMRFGFVHGVMNTDNVTL
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
SGQTIDFGPCAFIDSFHPQAVFSSIDSHGRYSFGRQPSIMGWNIARLAEALLPLMSIDEA
ECCEECCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RNIVHEFPDMYRRSWLDEMADAVGISPDDDHAAGVLDDLVALLDVHRPDYAQFMRSLSDG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
TTVSLFPWAQQWEAEVSSLRVAAPRNPVYVPRNYLVEDALEHAMNADMSVFSLLVEAGKN
CEEEEECCHHHHHHHHHHEEEECCCCCEECCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
PYLREKRFEKLENPAPETWQDYVTYCGT
CCHHHHHHHHHCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PLTFAHSFADAVPSLSVPWRAEQWPDPRIIVFNHELGQELGIDEASLLSNITQQGHAQA
CCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHHCCHHH
YSGHQFGQFNPLLGDGRALVLGDCAQTNAPHGQFEISLKGSGPTPFARRGDGRATLGPML
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
REYLISEALHGLGIPTTRSLAVITTGTDVQRERLLPGAVVVRVAQNHLRVGSVQCAAMRD
HHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECC
DDSLAALVRYALSSHEDGVSDAEAAGLLLRRVSTSQAKLVAQWMRFGFVHGVMNTDNVTL
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
SGQTIDFGPCAFIDSFHPQAVFSSIDSHGRYSFGRQPSIMGWNIARLAEALLPLMSIDEA
ECCEECCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RNIVHEFPDMYRRSWLDEMADAVGISPDDDHAAGVLDDLVALLDVHRPDYAQFMRSLSDG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
TTVSLFPWAQQWEAEVSSLRVAAPRNPVYVPRNYLVEDALEHAMNADMSVFSLLVEAGKN
CEEEEECCHHHHHHHHHHEEEECCCCCEECCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
PYLREKRFEKLENPAPETWQDYVTYCGT
CCHHHHHHHHHCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12840036 [H]