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The map label for this gene is rbfA

Identifier: 38234057

GI number: 38234057

Start: 1495936

End: 1496379

Strand: Reverse

Name: rbfA

Synonym: DIP1476

Alternate gene names: 38234057

Gene position: 1496379-1495936 (Counterclockwise)

Preceding gene: 38234058

Following gene: 38234056

Centisome position: 60.13

GC content: 49.55

Gene sequence:

>444_bases
ATGGTCGATCATGCACGAGCAGCACGTCTAGCAAAACGAATCCAGACTATCGTGGCAACCGCAATTGAACGAGAGGTCAA
AGACCGTCGTCTAGAATATGTCACCGTTACTGATACTCGTGTCACCGGTGACCTACATGATGCAACTGTCTATTACACAG
TTCGTGGCCGGACTATTGATGACCAACCTGATCTCAAAGCTGCAGCCGAAGCACTACAGCGTGCTCGCGGCCAGCTACGC
AAAATCGTAGGTGATCAGCTATCAGTTCGTTTTACACCGACGTTGTCTTTCGAGCTTGATACAGTTCCTGAGACAAGTGC
TCATATGGAGGATCTGTTAGCTCGTGCGCGAGCACGCGATCTCGAACTCGCAGAGCTGAAAAAGAATGCCCAGCCAGCAG
GAGATGCTCATCCTTATAAAGATGACGATGCGATGAATGACTAA

Upstream 100 bases:

>100_bases
AATGTTGAGTCATTCCATTGGGAACAGTGCCCTTTCGATATAAGTGGTAGTCTCGGCTAGGCTTTTAAGAAAATACAGTA
ATAAATAAGGAGCACGCATC

Downstream 100 bases:

>100_bases
TGTCGAGCTGATAGCGCAGCACATTCTCAAGGGCACCATATTTATGTAGTTGGTCATGAACGCCCTGATGCAGATGCAGT
CGGTAGTGTGTGCGCCTTGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MVDHARAARLAKRIQTIVATAIEREVKDRRLEYVTVTDTRVTGDLHDATVYYTVRGRTIDDQPDLKAAAEALQRARGQLR
KIVGDQLSVRFTPTLSFELDTVPETSAHMEDLLARARARDLELAELKKNAQPAGDAHPYKDDDAMND

Sequences:

>Translated_147_residues
MVDHARAARLAKRIQTIVATAIEREVKDRRLEYVTVTDTRVTGDLHDATVYYTVRGRTIDDQPDLKAAAEALQRARGQLR
KIVGDQLSVRFTPTLSFELDTVPETSAHMEDLLARARARDLELAELKKNAQPAGDAHPYKDDDAMND
>Mature_147_residues
MVDHARAARLAKRIQTIVATAIEREVKDRRLEYVTVTDTRVTGDLHDATVYYTVRGRTIDDQPDLKAAAEALQRARGQLR
KIVGDQLSVRFTPTLSFELDTVPETSAHMEDLLARARARDLELAELKKNAQPAGDAHPYKDDDAMND

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CORDI (Q6NGN3)

Other databases:

- EMBL:   BX248358
- RefSeq:   NP_939824.1
- ProteinModelPortal:   Q6NGN3
- SMR:   Q6NGN3
- GeneID:   2650361
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP1476
- NMPDR:   fig|257309.1.peg.1415
- HOGENOM:   HBG751055
- OMA:   TGDLHDA
- PhylomeDB:   Q6NGN3
- ProtClustDB:   PRK00521
- BioCyc:   CDIP257309:DIP1476-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 16499; Mature: 16499

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDHARAARLAKRIQTIVATAIEREVKDRRLEYVTVTDTRVTGDLHDATVYYTVRGRTID
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEECCCCCEEEEEEEECCCCC
DQPDLKAAAEALQRARGQLRKIVGDQLSVRFTPTLSFELDTVPETSAHMEDLLARARARD
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHCC
LELAELKKNAQPAGDAHPYKDDDAMND
CHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVDHARAARLAKRIQTIVATAIEREVKDRRLEYVTVTDTRVTGDLHDATVYYTVRGRTID
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEECCCCCEEEEEEEECCCCC
DQPDLKAAAEALQRARGQLRKIVGDQLSVRFTPTLSFELDTVPETSAHMEDLLARARARD
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHCC
LELAELKKNAQPAGDAHPYKDDDAMND
CHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910