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The map label for this gene is ycaJ [C]

Identifier: 38233937

GI number: 38233937

Start: 1365030

End: 1366400

Strand: Reverse

Name: ycaJ [C]

Synonym: DIP1351

Alternate gene names: 38233937

Gene position: 1366400-1365030 (Counterclockwise)

Preceding gene: 38233938

Following gene: 38233936

Centisome position: 54.91

GC content: 47.48

Gene sequence:

>1371_bases
ATGAAGAGCATAATGGACTCTCTTTTTGATTCTCCAGTCCAAACTGCTCGGTCATCTAGTGATTCAGATGCTCATAACTT
TTTCAAAGCAGGGCCGTATGCACCATTGGCAGCACGCATGCGCCCTCAATCGTTGGATGAAGTTGTGGGGCAACGCCATC
TGTTAGATTCTGGGAAGCCTCTACAGCGGCTAATTGCTGGATCCGGTGATGCCTCTGTGATTTTATATGGACCTCCAGGA
ACTGGTAAGACCACGATTGCTTCGTTGATAAGTGCTGGTACTGGCCATGAATTTGTTGGATTATCTGCATTAAATTCTGG
CGTGAAAGAAATCAGAGAGGTTATCGATCAAGCAAGGCGAAATCTTATTCATGGAAAACGGACGGTCTTATTTATCGACG
AGGTCCATCGTTTTTCCAAGACGCAACAAGACGCCTTACTTGCTGCCGTAGAAAACCGAACAGTTTTGTTGGTTGCAGCT
ACAACTGAAAATCCTTCGTTTTCCGTAGTGGCGCCGTTGCTTTCGCGTTCTCTCATTTTGCAATTAAAACCTTTAACTCA
CGACGATATTAAAACCGTGTTGTTACATGCTTTGCAAGATAAAAGAGGTCTTGATAATCGAATCACTATTTCTGACGAAG
CGTTGGAACAACTAGTTCTCCTTTCAGGCGGCGATGCACGGCGTTCATTAACTTATTTAGAAGCGGCATCTGAATCTTTA
GCCGATGGGGAAGAGCTAACGCCTGAGATCATTCGGCACAATGTTGACAAAGCTATTGTTCGATATGATCGCGATGGAGA
TCAGCATTATGACGTTGTGAGTGCCTTCATTAAGTCGATGAGGGGCTCTGATGTCGATGCTGCATTGCATTACCTCGCCA
GAATGATTGATGCAGGAGAAGACCCCCGTTTTATCGCGCGTCGTCTTGTGATTCACGCCAGCGAAGACGTCGGCATGGCG
GATCCTCAAGCGTTGAGCGTAGCAGTAGCGGCGAGTCAAGCAGTCGCTTTGATTGGTATGCCAGAAGCACGTATCAATTT
AGCGCAGGCAACTATTCACTTGGCGACGGCGCCAAAATCCAACGCTGTGATAACTGCGATTGATGCTGCGCTGGCAGACG
TAAAGCAAGGTAAAACAGGCCCAGTTCCAGCGCATCTGCGTGATGGTCATTATGCGGGTGCCAAGCAACTGGGAAACGCC
GTTGGGTATAAGTACCCGCATGATGATCCTCGAGGAATTGTCGAGCAGCAATATATCCCTAACGGACTTGAGGATGTTGT
TTATTATCGCCCAAGCGAGCATGGGGCAGAACAACGGATCGAGAGTTACTTAGGCAAGTTGCGTAGGATTGTACGAGGGC
AACGTCGATAA

Upstream 100 bases:

>100_bases
TACGAGATTTCCGGTAGTTGCTGATTTTGCCCAAGCGGTTGTTGACCTCCTCACGGACGATGAGTCGACTGAATAGAGTT
GCAGACTAACGAAAAGGAGG

Downstream 100 bases:

>100_bases
GCTTTTGGCAAAAGATTTGATGATACGCAAGGCCTGTGATTTGTTTTGATCGATCTACGAGTAAGCTAGAAAACCGATTG
CTTTTCTGCTGGCATGTGCA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MKSIMDSLFDSPVQTARSSSDSDAHNFFKAGPYAPLAARMRPQSLDEVVGQRHLLDSGKPLQRLIAGSGDASVILYGPPG
TGKTTIASLISAGTGHEFVGLSALNSGVKEIREVIDQARRNLIHGKRTVLFIDEVHRFSKTQQDALLAAVENRTVLLVAA
TTENPSFSVVAPLLSRSLILQLKPLTHDDIKTVLLHALQDKRGLDNRITISDEALEQLVLLSGGDARRSLTYLEAASESL
ADGEELTPEIIRHNVDKAIVRYDRDGDQHYDVVSAFIKSMRGSDVDAALHYLARMIDAGEDPRFIARRLVIHASEDVGMA
DPQALSVAVAASQAVALIGMPEARINLAQATIHLATAPKSNAVITAIDAALADVKQGKTGPVPAHLRDGHYAGAKQLGNA
VGYKYPHDDPRGIVEQQYIPNGLEDVVYYRPSEHGAEQRIESYLGKLRRIVRGQRR

Sequences:

>Translated_456_residues
MKSIMDSLFDSPVQTARSSSDSDAHNFFKAGPYAPLAARMRPQSLDEVVGQRHLLDSGKPLQRLIAGSGDASVILYGPPG
TGKTTIASLISAGTGHEFVGLSALNSGVKEIREVIDQARRNLIHGKRTVLFIDEVHRFSKTQQDALLAAVENRTVLLVAA
TTENPSFSVVAPLLSRSLILQLKPLTHDDIKTVLLHALQDKRGLDNRITISDEALEQLVLLSGGDARRSLTYLEAASESL
ADGEELTPEIIRHNVDKAIVRYDRDGDQHYDVVSAFIKSMRGSDVDAALHYLARMIDAGEDPRFIARRLVIHASEDVGMA
DPQALSVAVAASQAVALIGMPEARINLAQATIHLATAPKSNAVITAIDAALADVKQGKTGPVPAHLRDGHYAGAKQLGNA
VGYKYPHDDPRGIVEQQYIPNGLEDVVYYRPSEHGAEQRIESYLGKLRRIVRGQRR
>Mature_456_residues
MKSIMDSLFDSPVQTARSSSDSDAHNFFKAGPYAPLAARMRPQSLDEVVGQRHLLDSGKPLQRLIAGSGDASVILYGPPG
TGKTTIASLISAGTGHEFVGLSALNSGVKEIREVIDQARRNLIHGKRTVLFIDEVHRFSKTQQDALLAAVENRTVLLVAA
TTENPSFSVVAPLLSRSLILQLKPLTHDDIKTVLLHALQDKRGLDNRITISDEALEQLVLLSGGDARRSLTYLEAASESL
ADGEELTPEIIRHNVDKAIVRYDRDGDQHYDVVSAFIKSMRGSDVDAALHYLARMIDAGEDPRFIARRLVIHASEDVGMA
DPQALSVAVAASQAVALIGMPEARINLAQATIHLATAPKSNAVITAIDAALADVKQGKTGPVPAHLRDGHYAGAKQLGNA
VGYKYPHDDPRGIVEQQYIPNGLEDVVYYRPSEHGAEQRIESYLGKLRRIVRGQRR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=40.7744874715262, Blast_Score=290, Evalue=2e-78,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=37.5854214123007, Blast_Score=248, Evalue=6e-66,
Organism=Homo sapiens, GI4506491, Length=243, Percent_Identity=27.9835390946502, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI31881687, Length=243, Percent_Identity=27.9835390946502, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI31563534, Length=299, Percent_Identity=25.752508361204, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI6677723, Length=336, Percent_Identity=23.8095238095238, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI194306571, Length=335, Percent_Identity=23.5820895522388, Blast_Score=66, Evalue=6e-11,
Organism=Homo sapiens, GI194306567, Length=335, Percent_Identity=23.5820895522388, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI1787119, Length=431, Percent_Identity=44.7795823665893, Blast_Score=345, Evalue=3e-96,
Organism=Saccharomyces cerevisiae, GI6324111, Length=442, Percent_Identity=38.4615384615385, Blast_Score=276, Evalue=3e-75,
Organism=Saccharomyces cerevisiae, GI6324039, Length=227, Percent_Identity=25.9911894273128, Blast_Score=74, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6324478, Length=218, Percent_Identity=26.605504587156, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI18859927, Length=249, Percent_Identity=24.4979919678715, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17647857, Length=306, Percent_Identity=23.8562091503268, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49492; Mature: 49492

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIMDSLFDSPVQTARSSSDSDAHNFFKAGPYAPLAARMRPQSLDEVVGQRHLLDSGKP
CHHHHHHHHCCHHHHHCCCCCCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCH
LQRLIAGSGDASVILYGPPGTGKTTIASLISAGTGHEFVGLSALNSGVKEIREVIDQARR
HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
NLIHGKRTVLFIDEVHRFSKTQQDALLAAVENRTVLLVAATTENPSFSVVAPLLSRSLIL
HHHCCCCEEEEHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCCCHHHHHHHHHHHHEE
QLKPLTHDDIKTVLLHALQDKRGLDNRITISDEALEQLVLLSGGDARRSLTYLEAASESL
EECCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ADGEELTPEIIRHNVDKAIVRYDRDGDQHYDVVSAFIKSMRGSDVDAALHYLARMIDAGE
CCCCCCCHHHHHHCHHHHHHEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
DPRFIARRLVIHASEDVGMADPQALSVAVAASQAVALIGMPEARINLAQATIHLATAPKS
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEEEEEECCHHHHHHHHHEEEEEECCCC
NAVITAIDAALADVKQGKTGPVPAHLRDGHYAGAKQLGNAVGYKYPHDDPRGIVEQQYIP
CCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCC
NGLEDVVYYRPSEHGAEQRIESYLGKLRRIVRGQRR
CCHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKSIMDSLFDSPVQTARSSSDSDAHNFFKAGPYAPLAARMRPQSLDEVVGQRHLLDSGKP
CHHHHHHHHCCHHHHHCCCCCCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCH
LQRLIAGSGDASVILYGPPGTGKTTIASLISAGTGHEFVGLSALNSGVKEIREVIDQARR
HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
NLIHGKRTVLFIDEVHRFSKTQQDALLAAVENRTVLLVAATTENPSFSVVAPLLSRSLIL
HHHCCCCEEEEHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCCCHHHHHHHHHHHHEE
QLKPLTHDDIKTVLLHALQDKRGLDNRITISDEALEQLVLLSGGDARRSLTYLEAASESL
EECCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ADGEELTPEIIRHNVDKAIVRYDRDGDQHYDVVSAFIKSMRGSDVDAALHYLARMIDAGE
CCCCCCCHHHHHHCHHHHHHEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
DPRFIARRLVIHASEDVGMADPQALSVAVAASQAVALIGMPEARINLAQATIHLATAPKS
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEEEEEECCHHHHHHHHHEEEEEECCCC
NAVITAIDAALADVKQGKTGPVPAHLRDGHYAGAKQLGNAVGYKYPHDDPRGIVEQQYIP
CCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCC
NGLEDVVYYRPSEHGAEQRIESYLGKLRRIVRGQRR
CCHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]