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The map label for this gene is ydiF [H]

Identifier: 38233874

GI number: 38233874

Start: 1297069

End: 1298700

Strand: Reverse

Name: ydiF [H]

Synonym: DIP1289

Alternate gene names: 38233874

Gene position: 1298700-1297069 (Counterclockwise)

Preceding gene: 38233875

Following gene: 38233873

Centisome position: 52.19

GC content: 49.63

Gene sequence:

>1632_bases
GTGATTGTGACCAATGATTTCGAAGTTCGCGTCGGTGCCCGCACTCTCTTGAATGCCCCAGGGCAACATTTGAGGGTACA
GCCCGGTGACAGAATTGGTCTGGTTGGACGAAATGGTGCTGGTAAAACCACGACGATGCGAATTCTCGCAGGCGAAACTC
AGCCGTATGGTGGCAGTGTCATCCGTTCCGGCGATATTGGTTACCTACCTCAAGATTCTCGTGAAGGAAACATAGATCAG
ACCGCGCGTGACAGAGTCCTATCAGCACGCGGTTTGGATCAGATTCAGGCATCCATGGAACGTCAACAAGAAATCATGGA
AACAACAGAAGATGAGAAAAAGCGTGATGCTGCGATCCGTAAATACTCGCGGTTGGAAGAGCGCTATCATGCACTCGGCG
GATATGAAGCTTCCTCAGAAGCCGCGAGAATTTGCGATAATCTTGGTTTGCCAGCACGAATTTTGGATCAGCCTCTGAAG
ACACTGTCTGGTGGTCAGAGGCGTCGCGTGGAACTCGCGCAGATTCTTTTTGCCGCTTCAGCTGGCTCTGGAAAATCTAA
GACCACGTTGCTACTTGACGAGCCTACTAACCATCTCGATGCAGATTCCATTACATGGTTGCGTGATTTTTTGAGTAAAC
ACGAAGGTGGTCTCATCATGATTTCCCATGATGTAGAACTCCTAGATGCCGTGTGTAATAAGATTTGGTTTTTAGATGCT
GTACGCGGGGAAGCAGACGTGTACAACATGGGGTTCGCCAAGTACAAAGATGCGCGAGCGACTGACGAAGCTCGTAGGCG
TCGTGAACGTGCCAATGCTGAAAAGAAAGCTGCGGCGTTGAAGGACCAAGCAGCAAGACTTGGTGCGAAAGCGACGAAGG
CTGCGGCCGCTAAACAGATGCTGGCGCGTGCAGAACGTATGGTGGGAAGCCTTGACGATGTGCGTGTCGCGGATAGAGTG
GCGCACATTTCTTTCCCAGAACCCGCACCATGTGGAAAAACCCCGTTAAATGCAAAGGGCCTAACTAAAATGTACGGTTC
TTTGGAAGTTTTCGCTGGTGTCGATTTAGCGATTGATAAGGGATCGCGAGTAGTAGTTCTTGGTTTCAATGGCGCAGGTA
AAACTACGTTGCTCAAGCTTCTCGCTGGCGTAGAAAGAACTGATGGCGAAGGTGGAATCGTTACTGGGCACGGTTTGAAG
ATCGGCTATTTTGCCCAAGAACACGACACCATCGATCCTCAAAAGTCTGTGTGGCAAAATACCATCGACGCCTGCCCAGG
TGCAGGTGAACAGGATCTTCGTGGACTTCTCGGAGCTTTCATGTTTTCGGGTGATCAACTAGAACAACCAGCTGGAACAT
TATCTGGCGGTGAAAAAACTCGTTTAGCGCTTGCCGCATTGGTGTCTTCACGAGCAAATGTTTTGCTTCTCGACGAGCCT
ACTAATAACCTTGATCCTATTTCTCGTGAGCAAGTTCTCGAAGCCTTGCGTACATATACAGGTGCAGTCGTACTCGTTAC
GCACGATCCGGGTGCAGTGAAAGCGCTTGAACCTGAACGCGTAATCGTATTACCTGATGGTGATGAAGATCTTTGGAGCG
AAGACTACATGGAAATTGTCGAATTAGCCTAG

Upstream 100 bases:

>100_bases
ATAACTATAGCCAAGACGATTTTCCCTTCGCAGGTGTCCGTACTTTGACATGGACACCTGCTTTTCTTTTGTTTACCTAG
CGTTGATAGGATAACCCGTT

Downstream 100 bases:

>100_bases
TTTTAACTGCGTAGAATAACGGTATGAAAATCTTCGGCAGTTTAATCTCTCGTCTTAGAGCAGAGAGCGAATTATCAGAT
GCTCATCGGAGCCTCATACT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MIVTNDFEVRVGARTLLNAPGQHLRVQPGDRIGLVGRNGAGKTTTMRILAGETQPYGGSVIRSGDIGYLPQDSREGNIDQ
TARDRVLSARGLDQIQASMERQQEIMETTEDEKKRDAAIRKYSRLEERYHALGGYEASSEAARICDNLGLPARILDQPLK
TLSGGQRRRVELAQILFAASAGSGKSKTTLLLDEPTNHLDADSITWLRDFLSKHEGGLIMISHDVELLDAVCNKIWFLDA
VRGEADVYNMGFAKYKDARATDEARRRRERANAEKKAAALKDQAARLGAKATKAAAAKQMLARAERMVGSLDDVRVADRV
AHISFPEPAPCGKTPLNAKGLTKMYGSLEVFAGVDLAIDKGSRVVVLGFNGAGKTTLLKLLAGVERTDGEGGIVTGHGLK
IGYFAQEHDTIDPQKSVWQNTIDACPGAGEQDLRGLLGAFMFSGDQLEQPAGTLSGGEKTRLALAALVSSRANVLLLDEP
TNNLDPISREQVLEALRTYTGAVVLVTHDPGAVKALEPERVIVLPDGDEDLWSEDYMEIVELA

Sequences:

>Translated_543_residues
MIVTNDFEVRVGARTLLNAPGQHLRVQPGDRIGLVGRNGAGKTTTMRILAGETQPYGGSVIRSGDIGYLPQDSREGNIDQ
TARDRVLSARGLDQIQASMERQQEIMETTEDEKKRDAAIRKYSRLEERYHALGGYEASSEAARICDNLGLPARILDQPLK
TLSGGQRRRVELAQILFAASAGSGKSKTTLLLDEPTNHLDADSITWLRDFLSKHEGGLIMISHDVELLDAVCNKIWFLDA
VRGEADVYNMGFAKYKDARATDEARRRRERANAEKKAAALKDQAARLGAKATKAAAAKQMLARAERMVGSLDDVRVADRV
AHISFPEPAPCGKTPLNAKGLTKMYGSLEVFAGVDLAIDKGSRVVVLGFNGAGKTTLLKLLAGVERTDGEGGIVTGHGLK
IGYFAQEHDTIDPQKSVWQNTIDACPGAGEQDLRGLLGAFMFSGDQLEQPAGTLSGGEKTRLALAALVSSRANVLLLDEP
TNNLDPISREQVLEALRTYTGAVVLVTHDPGAVKALEPERVIVLPDGDEDLWSEDYMEIVELA
>Mature_543_residues
MIVTNDFEVRVGARTLLNAPGQHLRVQPGDRIGLVGRNGAGKTTTMRILAGETQPYGGSVIRSGDIGYLPQDSREGNIDQ
TARDRVLSARGLDQIQASMERQQEIMETTEDEKKRDAAIRKYSRLEERYHALGGYEASSEAARICDNLGLPARILDQPLK
TLSGGQRRRVELAQILFAASAGSGKSKTTLLLDEPTNHLDADSITWLRDFLSKHEGGLIMISHDVELLDAVCNKIWFLDA
VRGEADVYNMGFAKYKDARATDEARRRRERANAEKKAAALKDQAARLGAKATKAAAAKQMLARAERMVGSLDDVRVADRV
AHISFPEPAPCGKTPLNAKGLTKMYGSLEVFAGVDLAIDKGSRVVVLGFNGAGKTTLLKLLAGVERTDGEGGIVTGHGLK
IGYFAQEHDTIDPQKSVWQNTIDACPGAGEQDLRGLLGAFMFSGDQLEQPAGTLSGGEKTRLALAALVSSRANVLLLDEP
TNNLDPISREQVLEALRTYTGAVVLVTHDPGAVKALEPERVIVLPDGDEDLWSEDYMEIVELA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=540, Percent_Identity=30.9259259259259, Blast_Score=193, Evalue=4e-49,
Organism=Homo sapiens, GI27881506, Length=497, Percent_Identity=30.1810865191147, Blast_Score=177, Evalue=3e-44,
Organism=Homo sapiens, GI10947137, Length=497, Percent_Identity=30.1810865191147, Blast_Score=177, Evalue=3e-44,
Organism=Homo sapiens, GI10947135, Length=520, Percent_Identity=29.8076923076923, Blast_Score=160, Evalue=3e-39,
Organism=Homo sapiens, GI69354671, Length=520, Percent_Identity=29.8076923076923, Blast_Score=160, Evalue=4e-39,
Organism=Homo sapiens, GI116734710, Length=242, Percent_Identity=30.9917355371901, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI31657092, Length=201, Percent_Identity=28.3582089552239, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI153792144, Length=190, Percent_Identity=30, Blast_Score=66, Evalue=1e-10,
Organism=Escherichia coli, GI1789751, Length=512, Percent_Identity=34.9609375, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1787041, Length=549, Percent_Identity=32.6047358834244, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI2367384, Length=496, Percent_Identity=33.4677419354839, Blast_Score=223, Evalue=3e-59,
Organism=Escherichia coli, GI1787182, Length=503, Percent_Identity=30.6163021868787, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI87081782, Length=558, Percent_Identity=24.5519713261649, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788225, Length=202, Percent_Identity=29.2079207920792, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789672, Length=222, Percent_Identity=26.5765765765766, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787164, Length=204, Percent_Identity=32.3529411764706, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=30.8056872037915, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790544, Length=233, Percent_Identity=27.8969957081545, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787758, Length=226, Percent_Identity=26.5486725663717, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787792, Length=207, Percent_Identity=27.536231884058, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1788165, Length=177, Percent_Identity=32.2033898305085, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787105, Length=202, Percent_Identity=28.2178217821782, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788053, Length=216, Percent_Identity=31.0185185185185, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786563, Length=179, Percent_Identity=32.9608938547486, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1789593, Length=196, Percent_Identity=30.1020408163265, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI48995001, Length=215, Percent_Identity=29.7674418604651, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=27.4336283185841, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=496, Percent_Identity=29.4354838709677, Blast_Score=186, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI17559834, Length=547, Percent_Identity=28.8848263254113, Blast_Score=184, Evalue=9e-47,
Organism=Caenorhabditis elegans, GI17553372, Length=525, Percent_Identity=30.0952380952381, Blast_Score=180, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17565586, Length=233, Percent_Identity=28.755364806867, Blast_Score=76, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6320874, Length=494, Percent_Identity=28.7449392712551, Blast_Score=179, Evalue=9e-46,
Organism=Saccharomyces cerevisiae, GI6321121, Length=547, Percent_Identity=28.5191956124314, Blast_Score=177, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6324314, Length=169, Percent_Identity=34.3195266272189, Blast_Score=81, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6323278, Length=166, Percent_Identity=30.1204819277108, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24666836, Length=535, Percent_Identity=31.9626168224299, Blast_Score=219, Evalue=4e-57,
Organism=Drosophila melanogaster, GI24641342, Length=504, Percent_Identity=31.9444444444444, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI24642252, Length=495, Percent_Identity=29.2929292929293, Blast_Score=188, Evalue=8e-48,
Organism=Drosophila melanogaster, GI18859989, Length=495, Percent_Identity=29.2929292929293, Blast_Score=188, Evalue=8e-48,
Organism=Drosophila melanogaster, GI24666092, Length=221, Percent_Identity=32.1266968325792, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221512771, Length=211, Percent_Identity=29.8578199052133, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58833; Mature: 58833

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVTNDFEVRVGARTLLNAPGQHLRVQPGDRIGLVGRNGAGKTTTMRILAGETQPYGGSV
CEECCCEEEEECHHHHHCCCCCEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCE
IRSGDIGYLPQDSREGNIDQTARDRVLSARGLDQIQASMERQQEIMETTEDEKKRDAAIR
EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KYSRLEERYHALGGYEASSEAARICDNLGLPARILDQPLKTLSGGQRRRVELAQILFAAS
HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
AGSGKSKTTLLLDEPTNHLDADSITWLRDFLSKHEGGLIMISHDVELLDAVCNKIWFLDA
CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHEEHHH
VRGEADVYNMGFAKYKDARATDEARRRRERANAEKKAAALKDQAARLGAKATKAAAAKQM
HCCCCCEECCCHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LARAERMVGSLDDVRVADRVAHISFPEPAPCGKTPLNAKGLTKMYGSLEVFAGVDLAIDK
HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEECCEEEECC
GSRVVVLGFNGAGKTTLLKLLAGVERTDGEGGIVTGHGLKIGYFAQEHDTIDPQKSVWQN
CCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEEEEECCCCCCCHHHHHHHH
TIDACPGAGEQDLRGLLGAFMFSGDQLEQPAGTLSGGEKTRLALAALVSSRANVLLLDEP
HHHHCCCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
TNNLDPISREQVLEALRTYTGAVVLVTHDPGAVKALEPERVIVLPDGDEDLWSEDYMEIV
CCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEECCCEEEEEECCCHHHHHHHHHHHH
ELA
HCC
>Mature Secondary Structure
MIVTNDFEVRVGARTLLNAPGQHLRVQPGDRIGLVGRNGAGKTTTMRILAGETQPYGGSV
CEECCCEEEEECHHHHHCCCCCEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCE
IRSGDIGYLPQDSREGNIDQTARDRVLSARGLDQIQASMERQQEIMETTEDEKKRDAAIR
EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KYSRLEERYHALGGYEASSEAARICDNLGLPARILDQPLKTLSGGQRRRVELAQILFAAS
HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
AGSGKSKTTLLLDEPTNHLDADSITWLRDFLSKHEGGLIMISHDVELLDAVCNKIWFLDA
CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHEEHHH
VRGEADVYNMGFAKYKDARATDEARRRRERANAEKKAAALKDQAARLGAKATKAAAAKQM
HCCCCCEECCCHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LARAERMVGSLDDVRVADRVAHISFPEPAPCGKTPLNAKGLTKMYGSLEVFAGVDLAIDK
HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEECCEEEECC
GSRVVVLGFNGAGKTTLLKLLAGVERTDGEGGIVTGHGLKIGYFAQEHDTIDPQKSVWQN
CCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCEEECCCEEEEEEECCCCCCCHHHHHHHH
TIDACPGAGEQDLRGLLGAFMFSGDQLEQPAGTLSGGEKTRLALAALVSSRANVLLLDEP
HHHHCCCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
TNNLDPISREQVLEALRTYTGAVVLVTHDPGAVKALEPERVIVLPDGDEDLWSEDYMEIV
CCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEECCCEEEEEECCCHHHHHHHHHHHH
ELA
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]