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The map label for this gene is yecS [H]

Identifier: 38233733

GI number: 38233733

Start: 1126569

End: 1127513

Strand: Reverse

Name: yecS [H]

Synonym: DIP1143

Alternate gene names: 38233733

Gene position: 1127513-1126569 (Counterclockwise)

Preceding gene: 38233734

Following gene: 38233732

Centisome position: 45.31

GC content: 49.74

Gene sequence:

>945_bases
ATGACTTCCCCACAACCTATTCAGGCAAAACCATTGCGGCATCCGGGCCGCTGGGTCGCTGCCATTATTATTCTCGCCCT
GTTTGTTTGGTTTCTTATTAGCGCTGCCACCAACGATGCATACGGCTGGGATATTTATCGCCAGTATCTTTTTGATACTC
GTATTGCTTCTGCTGCAGTGCATACGCTAGCTATTACGATCTTGTCGATGCTCATGGGTGTCGTTTTAGGCTGCATAGTA
GCAATTATGCGTATGTCGCCAAACCCTGTTTTGCGTGGTATTTCGTGGTTCTATTTGTGGATCTTCCGAGGTACCCCGGT
CTACGTTCAGTTGGTGTTCTGGGGACTATTGGGCTCTATTTACAGCGGCATCAACTTGGGCTTTACCGAAATTTCATTGG
AAAACCTGCTTTCCAACATGTTTATTCTTGCAGTCGTAGGTCTTGGGCTTAACGAGGCTGCTTACATGTCTGAGATTGTC
CGCTCAGGTATCCAAGCAGTTCCCGAGGGACAGACAGAAGCATCTAAAGCTTTAGGTATGAGCTGGTGGATGACCATTCG
TCGTACTGTATTGCCACAAGCAATGCGTATCATCGTCCCGCCTACTGGCAATGAGTTTATTTCATTGCTGAAGACCACCT
CACTGGTTGTGGCAATCCCTTACACCTCTGAGCTCTATGGTCGTGCAACCGATATCGCAGCAGCGCTTTTCGACCCAGTA
CCACTTTTGCTCGTTGCGGCAACGTGGTACCTAGTGATTACCTCGTTGCTCATGGTGGCCCAACACTACTTGGAGAAGTA
TTACGACCGTGGCGCAACGCGCCAGCTCACTGCACGTCAACTCGCGGCACTTGCTGACGCTGAAGGCACTCTTCCCAAAA
ATGTTGACATCATTGCAGAAACACCCAAGCCGCACACTCCCCGCACTCCTAAGAAAGGCGCCTAA

Upstream 100 bases:

>100_bases
AGGTTACGTTGAGCAAGGAATGATCAACGAAAAACCTATCTAACTCGACGCTTTACGTGTAGCTCCCCTGTTTATTTCCC
CTCGTTAAAAGGACTTATCC

Downstream 100 bases:

>100_bases
GCCATGACGGACAATCTCATGATTGATGCACAGAAACTGTGTAAAAACTACGGCCAGTTGAGCGTGCTTAAAGGCATCGA
CCTCCAGGTTCCCCAAGGAA

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MTSPQPIQAKPLRHPGRWVAAIIILALFVWFLISAATNDAYGWDIYRQYLFDTRIASAAVHTLAITILSMLMGVVLGCIV
AIMRMSPNPVLRGISWFYLWIFRGTPVYVQLVFWGLLGSIYSGINLGFTEISLENLLSNMFILAVVGLGLNEAAYMSEIV
RSGIQAVPEGQTEASKALGMSWWMTIRRTVLPQAMRIIVPPTGNEFISLLKTTSLVVAIPYTSELYGRATDIAAALFDPV
PLLLVAATWYLVITSLLMVAQHYLEKYYDRGATRQLTARQLAALADAEGTLPKNVDIIAETPKPHTPRTPKKGA

Sequences:

>Translated_314_residues
MTSPQPIQAKPLRHPGRWVAAIIILALFVWFLISAATNDAYGWDIYRQYLFDTRIASAAVHTLAITILSMLMGVVLGCIV
AIMRMSPNPVLRGISWFYLWIFRGTPVYVQLVFWGLLGSIYSGINLGFTEISLENLLSNMFILAVVGLGLNEAAYMSEIV
RSGIQAVPEGQTEASKALGMSWWMTIRRTVLPQAMRIIVPPTGNEFISLLKTTSLVVAIPYTSELYGRATDIAAALFDPV
PLLLVAATWYLVITSLLMVAQHYLEKYYDRGATRQLTARQLAALADAEGTLPKNVDIIAETPKPHTPRTPKKGA
>Mature_313_residues
TSPQPIQAKPLRHPGRWVAAIIILALFVWFLISAATNDAYGWDIYRQYLFDTRIASAAVHTLAITILSMLMGVVLGCIVA
IMRMSPNPVLRGISWFYLWIFRGTPVYVQLVFWGLLGSIYSGINLGFTEISLENLLSNMFILAVVGLGLNEAAYMSEIVR
SGIQAVPEGQTEASKALGMSWWMTIRRTVLPQAMRIIVPPTGNEFISLLKTTSLVVAIPYTSELYGRATDIAAALFDPVP
LLLVAATWYLVITSLLMVAQHYLEKYYDRGATRQLTARQLAALADAEGTLPKNVDIIAETPKPHTPRTPKKGA

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=215, Percent_Identity=37.6744186046512, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1788645, Length=212, Percent_Identity=36.3207547169811, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=31.9047619047619, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI87082239, Length=280, Percent_Identity=29.2857142857143, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1787087, Length=234, Percent_Identity=34.1880341880342, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786873, Length=210, Percent_Identity=31.9047619047619, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788646, Length=232, Percent_Identity=29.3103448275862, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1786874, Length=209, Percent_Identity=28.2296650717703, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787086, Length=218, Percent_Identity=31.651376146789, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48994930, Length=76, Percent_Identity=42.1052631578947, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34670; Mature: 34539

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPQPIQAKPLRHPGRWVAAIIILALFVWFLISAATNDAYGWDIYRQYLFDTRIASAAV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
HTLAITILSMLMGVVLGCIVAIMRMSPNPVLRGISWFYLWIFRGTPVYVQLVFWGLLGSI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
YSGINLGFTEISLENLLSNMFILAVVGLGLNEAAYMSEIVRSGIQAVPEGQTEASKALGM
HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
SWWMTIRRTVLPQAMRIIVPPTGNEFISLLKTTSLVVAIPYTSELYGRATDIAAALFDPV
HHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHCHH
PLLLVAATWYLVITSLLMVAQHYLEKYYDRGATRQLTARQLAALADAEGTLPKNVDIIAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEC
TPKPHTPRTPKKGA
CCCCCCCCCCCCCC
>Mature Secondary Structure 
TSPQPIQAKPLRHPGRWVAAIIILALFVWFLISAATNDAYGWDIYRQYLFDTRIASAAV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
HTLAITILSMLMGVVLGCIVAIMRMSPNPVLRGISWFYLWIFRGTPVYVQLVFWGLLGSI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
YSGINLGFTEISLENLLSNMFILAVVGLGLNEAAYMSEIVRSGIQAVPEGQTEASKALGM
HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
SWWMTIRRTVLPQAMRIIVPPTGNEFISLLKTTSLVVAIPYTSELYGRATDIAAALFDPV
HHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHCHH
PLLLVAATWYLVITSLLMVAQHYLEKYYDRGATRQLTARQLAALADAEGTLPKNVDIIAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEC
TPKPHTPRTPKKGA
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]