Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
---|---|
Accession | NC_005139 |
Length | 3,354,505 |
Click here to switch to the map view.
The map label for this gene is 37680857
Identifier: 37680857
GI number: 37680857
Start: 2709443
End: 2711791
Strand: Direct
Name: 37680857
Synonym: VV2673
Alternate gene names: NA
Gene position: 2709443-2711791 (Clockwise)
Preceding gene: 37680851
Following gene: 37680859
Centisome position: 80.77
GC content: 45.89
Gene sequence:
>2349_bases ATGGAACAAGCTGAAATTCTCTCAATCGCAGAAAGGCTTATCCCGGTTTATCACGCGGAAGACTTTGATTTTGTCCTTGG TCAATTGACCGAAGGCTACCCTCCTTCCGCTAAATTACTGGTAAAAATGGAATTAAATCGTGTCATGGCGCCTTGCAAAA AGAGCATCGACTTGCGAGGCCGAGTACAGGGCGATTGTCGAGAATACGAAATTGACGGTATCAAACATTGGTTTGATGAT GTCGCCTTTAATGCTTACTACAAAAACACGCGCAAATTTGGTGGCTATACCGAAGGCGTTTGGGAAGCGTTAATTAACAC ACGCAACAGTTTCCGCGCCTTAGGCAAAGGCGGTCAACCGGCCAGCAGCCAAGGGCTGAGTGATGCCAGCAGTCCATTTG AGGCCGAGGCAGTCCATCTTGGTTACGATCTCAAACGCCAAGAAAAGCGGCTCAGAGTGCACTCTCAAGTCGACATTACG TTATCAAAAGGGCAATTGCTCCACGGCGTCAGTGTTGATCTTTCCGCTTCTGGTGCGAAGTTCAAAGTACCGAGTGCATT TAACTACAGCCTTGGCGAAGTGATTCAAATTACCTTTAGTGAACTGGCCAAAACCTCGCAAATTGCTCACGTTGATAAGC CGATTGAATACCGTGTTTTGGCTGTTGAAGATTCTTATGAAAACGATGCGGTTAAGTTTCTTCGTTGCTTACGCCTGACC GACACCAATGTTGTCTCAAGAGTGATCGATGAGTCTTTAAATAGCTCAGCCAAACGTGCCCGACACGATAACCAAGACAA AATCATTCGAGCAAGAACGCGGGGCTACGAGCATATTTATCTAAAGCACACTTGTAACTTACCGCTGTTTTTCCAAGGCG ATGAGCTCAAGCTCGCCATGCTCACGCCAAACAATATGCCGATTTGGCAATACTGGCATGATGAACGAAATCAACAGGTG TTTGGTTCACTGTTTAACTCACAGCGAATGTCGATGCTAATGCGACCGGGGCTCAAAGGTGCCAGTAACGTTATTTATGC GTTTACTCACGAACATGAAGGGAAAAACTTTTTCTACTCCATGCTCATGCCCGAGGCCACACGTGAACAAAGACAGCTGT TTTGGCATCTTGGCGCAAAACGAGCCAGTTGGCGGGCATTCCGTATTTCCATTTTTGAACTCAGTGAAAACGAACGCCAA CAACTCGGCAGCTTCTCGCAAGAGTTAGCCGAAGCCTCTTCAGGGTTAACACATTGTGGGATTTTGCAAGAAATTGCTGA CAACTCGAATGGCGCAGACTATCTCTTTACCGAAAAGCCTCGACTGCCATCAAGCACCTTAAATGCTTTTCGTCATACGC GGAAAATCATCGGCTCCCCAAAAGGAATTTTCTTTGATGCCCAGTCTCGTAGAAAAGAACCTCGCTATCGTTTTCAATCA CCTCTGACGCTGACCAAAGCAGACGGTTTGGCGATGAGAGGCAAGACGATCGATCTGTCCAAGCGAGGGTTGAGTCTCAC CTTAGATGCGCCACTTGAGTTGGTGTCGTCTGAAGAGATCGAGATCAACCTACATGAGCTGCAACTCTACGATAAAAAGC TGCCATTGGACAAAATTCCTTATCGTGTGGTTCGTGTCAGCCCAGACAACAAGCAAGTGCAACTGGTGATTGATGAAAAC AGCCAAACGATGAAAACCATTGCGTTTTTCAATAGCATCATCGAACACAACCAAGACAAGCTCAAACCACAAAACGAGAT CCTACCAAGTAATGAGCTGCTCGAATCGTTGCACGGCATTTTGCTGTCCAAAATGGTCAGCACGCCAGTGTTCATCAGTA AGACGCAATCGGGCTACAGAACCAAGGCCATCGGGGTTAACTTCCCCCTAGAAAAGCACTTAATGGTATTGGCAAAGCTA GGGCACAAAGAGAATTTCTCTTTAGAACCCATCTATAAAGGCCGTTCAAATACCTTAATCGCCAATCCGACGAAACGGAT TGAAGGGGCAGAACCACACCATCACGACATTTACATCGCAGTGGCAAAATTTGGCGACAAAATCAAAGCCGTACAAACAA AGCTGACGAACGAGTTTGATAGTGTCAAAGAACGCATCCTATTTATTAAAAAAGCACAGATGTCGGGCGAGTTTTATGTG CTGAGGCTATCCACCTCACCGATTTTCAGCCCGATGACTTCCCTGTTACAAAAAGATCTGAATGAACTTTCTCAACTCAG CATGCATCAAGCCAGCAAACTGGAAAAAGAACTGGCAACATTGGTTGGCTATTGTGAAATAGAGGAAGTGACAGAAGAGA TTTTGGTACGACTTGAACTGACAAATTAA
Upstream 100 bases:
>100_bases GACCACTGATCCGTTAAACCTCAAACAATGTGCTGTTATACTTAAGTTTATTAACACTTTGCCGATACTCTTTTAATAAG CAGCTACTTTAACAGAAAAA
Downstream 100 bases:
>100_bases GCGACTCAGTGGCGCTGGTTTGAGACGGTTTTTCTTTCGGGATAATCATGGGCAGAACGATTCTGCCCATGTTTGTGTTT AACATTCTTCAGTTGTTACG
Product: hypothetical protein
Products: NA
Alternate protein names: Type IV Pilus Assembly Protein PilZ; Type IV Pilus Assembly TapZ; Glycosyltransferase
Number of amino acids: Translated: 782; Mature: 782
Protein sequence:
>782_residues MEQAEILSIAERLIPVYHAEDFDFVLGQLTEGYPPSAKLLVKMELNRVMAPCKKSIDLRGRVQGDCREYEIDGIKHWFDD VAFNAYYKNTRKFGGYTEGVWEALINTRNSFRALGKGGQPASSQGLSDASSPFEAEAVHLGYDLKRQEKRLRVHSQVDIT LSKGQLLHGVSVDLSASGAKFKVPSAFNYSLGEVIQITFSELAKTSQIAHVDKPIEYRVLAVEDSYENDAVKFLRCLRLT DTNVVSRVIDESLNSSAKRARHDNQDKIIRARTRGYEHIYLKHTCNLPLFFQGDELKLAMLTPNNMPIWQYWHDERNQQV FGSLFNSQRMSMLMRPGLKGASNVIYAFTHEHEGKNFFYSMLMPEATREQRQLFWHLGAKRASWRAFRISIFELSENERQ QLGSFSQELAEASSGLTHCGILQEIADNSNGADYLFTEKPRLPSSTLNAFRHTRKIIGSPKGIFFDAQSRRKEPRYRFQS PLTLTKADGLAMRGKTIDLSKRGLSLTLDAPLELVSSEEIEINLHELQLYDKKLPLDKIPYRVVRVSPDNKQVQLVIDEN SQTMKTIAFFNSIIEHNQDKLKPQNEILPSNELLESLHGILLSKMVSTPVFISKTQSGYRTKAIGVNFPLEKHLMVLAKL GHKENFSLEPIYKGRSNTLIANPTKRIEGAEPHHHDIYIAVAKFGDKIKAVQTKLTNEFDSVKERILFIKKAQMSGEFYV LRLSTSPIFSPMTSLLQKDLNELSQLSMHQASKLEKELATLVGYCEIEEVTEEILVRLELTN
Sequences:
>Translated_782_residues MEQAEILSIAERLIPVYHAEDFDFVLGQLTEGYPPSAKLLVKMELNRVMAPCKKSIDLRGRVQGDCREYEIDGIKHWFDD VAFNAYYKNTRKFGGYTEGVWEALINTRNSFRALGKGGQPASSQGLSDASSPFEAEAVHLGYDLKRQEKRLRVHSQVDIT LSKGQLLHGVSVDLSASGAKFKVPSAFNYSLGEVIQITFSELAKTSQIAHVDKPIEYRVLAVEDSYENDAVKFLRCLRLT DTNVVSRVIDESLNSSAKRARHDNQDKIIRARTRGYEHIYLKHTCNLPLFFQGDELKLAMLTPNNMPIWQYWHDERNQQV FGSLFNSQRMSMLMRPGLKGASNVIYAFTHEHEGKNFFYSMLMPEATREQRQLFWHLGAKRASWRAFRISIFELSENERQ QLGSFSQELAEASSGLTHCGILQEIADNSNGADYLFTEKPRLPSSTLNAFRHTRKIIGSPKGIFFDAQSRRKEPRYRFQS PLTLTKADGLAMRGKTIDLSKRGLSLTLDAPLELVSSEEIEINLHELQLYDKKLPLDKIPYRVVRVSPDNKQVQLVIDEN SQTMKTIAFFNSIIEHNQDKLKPQNEILPSNELLESLHGILLSKMVSTPVFISKTQSGYRTKAIGVNFPLEKHLMVLAKL GHKENFSLEPIYKGRSNTLIANPTKRIEGAEPHHHDIYIAVAKFGDKIKAVQTKLTNEFDSVKERILFIKKAQMSGEFYV LRLSTSPIFSPMTSLLQKDLNELSQLSMHQASKLEKELATLVGYCEIEEVTEEILVRLELTN >Mature_782_residues MEQAEILSIAERLIPVYHAEDFDFVLGQLTEGYPPSAKLLVKMELNRVMAPCKKSIDLRGRVQGDCREYEIDGIKHWFDD VAFNAYYKNTRKFGGYTEGVWEALINTRNSFRALGKGGQPASSQGLSDASSPFEAEAVHLGYDLKRQEKRLRVHSQVDIT LSKGQLLHGVSVDLSASGAKFKVPSAFNYSLGEVIQITFSELAKTSQIAHVDKPIEYRVLAVEDSYENDAVKFLRCLRLT DTNVVSRVIDESLNSSAKRARHDNQDKIIRARTRGYEHIYLKHTCNLPLFFQGDELKLAMLTPNNMPIWQYWHDERNQQV FGSLFNSQRMSMLMRPGLKGASNVIYAFTHEHEGKNFFYSMLMPEATREQRQLFWHLGAKRASWRAFRISIFELSENERQ QLGSFSQELAEASSGLTHCGILQEIADNSNGADYLFTEKPRLPSSTLNAFRHTRKIIGSPKGIFFDAQSRRKEPRYRFQS PLTLTKADGLAMRGKTIDLSKRGLSLTLDAPLELVSSEEIEINLHELQLYDKKLPLDKIPYRVVRVSPDNKQVQLVIDEN SQTMKTIAFFNSIIEHNQDKLKPQNEILPSNELLESLHGILLSKMVSTPVFISKTQSGYRTKAIGVNFPLEKHLMVLAKL GHKENFSLEPIYKGRSNTLIANPTKRIEGAEPHHHDIYIAVAKFGDKIKAVQTKLTNEFDSVKERILFIKKAQMSGEFYV LRLSTSPIFSPMTSLLQKDLNELSQLSMHQASKLEKELATLVGYCEIEEVTEEILVRLELTN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88999; Mature: 88999
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQAEILSIAERLIPVYHAEDFDFVLGQLTEGYPPSAKLLVKMELNRVMAPCKKSIDLRG CCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCC RVQGDCREYEIDGIKHWFDDVAFNAYYKNTRKFGGYTEGVWEALINTRNSFRALGKGGQP CCCCCCCEEECCHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHCCHHHHHHCCCCCC ASSQGLSDASSPFEAEAVHLGYDLKRQEKRLRVHSQVDITLSKGQLLHGVSVDLSASGAK CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHEEECEEEEEEECCCEEECEEEEEECCCCE FKVPSAFNYSLGEVIQITFSELAKTSQIAHVDKPIEYRVLAVEDSYENDAVKFLRCLRLT EECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHCC DTNVVSRVIDESLNSSAKRARHDNQDKIIRARTRGYEHIYLKHTCNLPLFFQGDELKLAM CHHHHHHHHHHHHCHHHHHHCCCCHHHEEEHHCCCCEEEEEEEECCCEEEEECCCEEEEE LTPNNMPIWQYWHDERNQQVFGSLFNSQRMSMLMRPGLKGASNVIYAFTHEHEGKNFFYS ECCCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEE MLMPEATREQRQLFWHLGAKRASWRAFRISIFELSENERQQLGSFSQELAEASSGLTHCG HHCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHH ILQEIADNSNGADYLFTEKPRLPSSTLNAFRHTRKIIGSPKGIFFDAQSRRKEPRYRFQS HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCHHCCC PLTLTKADGLAMRGKTIDLSKRGLSLTLDAPLELVSSEEIEINLHELQLYDKKLPLDKIP CCEEEECCCEEECCCEEEECCCCEEEEECCCHHHHCCCCEEEEEEHEEEECCCCCCCCCC YRVVRVSPDNKQVQLVIDENSQTMKTIAFFNSIIEHNQDKLKPQNEILPSNELLESLHGI EEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHCCCHHCCCCHHHHHHHHHHH LLSKMVSTPVFISKTQSGYRTKAIGVNFPLEKHLMVLAKLGHKENFSLEPIYKGRSNTLI HHHHHHCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCEE ANPTKRIEGAEPHHHDIYIAVAKFGDKIKAVQTKLTNEFDSVKERILFIKKAQMSGEFYV ECCHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEE LRLSTSPIFSPMTSLLQKDLNELSQLSMHQASKLEKELATLVGYCEIEEVTEEILVRLEL EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE TN CC >Mature Secondary Structure MEQAEILSIAERLIPVYHAEDFDFVLGQLTEGYPPSAKLLVKMELNRVMAPCKKSIDLRG CCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCC RVQGDCREYEIDGIKHWFDDVAFNAYYKNTRKFGGYTEGVWEALINTRNSFRALGKGGQP CCCCCCCEEECCHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHCCHHHHHHCCCCCC ASSQGLSDASSPFEAEAVHLGYDLKRQEKRLRVHSQVDITLSKGQLLHGVSVDLSASGAK CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHEEECEEEEEEECCCEEECEEEEEECCCCE FKVPSAFNYSLGEVIQITFSELAKTSQIAHVDKPIEYRVLAVEDSYENDAVKFLRCLRLT EECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHCC DTNVVSRVIDESLNSSAKRARHDNQDKIIRARTRGYEHIYLKHTCNLPLFFQGDELKLAM CHHHHHHHHHHHHCHHHHHHCCCCHHHEEEHHCCCCEEEEEEEECCCEEEEECCCEEEEE LTPNNMPIWQYWHDERNQQVFGSLFNSQRMSMLMRPGLKGASNVIYAFTHEHEGKNFFYS ECCCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEE MLMPEATREQRQLFWHLGAKRASWRAFRISIFELSENERQQLGSFSQELAEASSGLTHCG HHCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHH ILQEIADNSNGADYLFTEKPRLPSSTLNAFRHTRKIIGSPKGIFFDAQSRRKEPRYRFQS HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCHHCCC PLTLTKADGLAMRGKTIDLSKRGLSLTLDAPLELVSSEEIEINLHELQLYDKKLPLDKIP CCEEEECCCEEECCCEEEECCCCEEEEECCCHHHHCCCCEEEEEEHEEEECCCCCCCCCC YRVVRVSPDNKQVQLVIDENSQTMKTIAFFNSIIEHNQDKLKPQNEILPSNELLESLHGI EEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHCCCHHCCCCHHHHHHHHHHH LLSKMVSTPVFISKTQSGYRTKAIGVNFPLEKHLMVLAKLGHKENFSLEPIYKGRSNTLI HHHHHHCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCEE ANPTKRIEGAEPHHHDIYIAVAKFGDKIKAVQTKLTNEFDSVKERILFIKKAQMSGEFYV ECCHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEE LRLSTSPIFSPMTSLLQKDLNELSQLSMHQASKLEKELATLVGYCEIEEVTEEILVRLEL EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE TN CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA