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The map label for this gene is yfiF [H]

Identifier: 37680850

GI number: 37680850

Start: 2699203

End: 2699931

Strand: Direct

Name: yfiF [H]

Synonym: VV2666

Alternate gene names: 37680850

Gene position: 2699203-2699931 (Clockwise)

Preceding gene: 37680840

Following gene: 37680851

Centisome position: 80.47

GC content: 43.21

Gene sequence:

>729_bases
ATGGAAGTGAGACGTACCGCTCATTGGCTGGGAAGCTCAGTCCGCCTGCTTGAGAAAACCGAAAAAGATCTTATTCTCAA
TACGTTCACTCTGATTGAACATGATACAGACGTATCTATTCTCAGTGAGCCGAGTACCCAGTTTGCCTTTTTTTTCATCC
ATTCAGAGGAGCAGTATCCGCTACTGTTGACGGCGCTAAAACTCAGCATCAATCTCAATAAGAAGTTGATTTTAATCCAC
TCTAGGCCGATTGAGTTGGGCTCTTACTATCACTCTGCCGTTTTCGACCATCTCAATCTGTCTTTACAAAACACCCAAGA
ATGGTTGAAACAGCTTATCTCAAGAATGAATCTACGATGGTATGTAGAGCTCGGTGGCAACGCTTCTGCACAAGCCGCCG
ATCCCATGATTAGCCAAGCGTTACAATCTCTGCTAAATCACATCGACAACAACATAAGCAATGTCATTCGCGAAGAAGAC
GCCGCCTCGTTTTGCCACTACTCTATTACCTATTTTTCTAAAGTGTTTCACAAAGAGATTGGACTCAGCTTCCGAGATTA
CTTGTCCAACAAACGCATCAATCTAGCTAAACAGCTGTTGCTCGAAGATCGCCATGCGAAAATCGCCTTTATCGCTTATC
AATGTGGTTATCGAGACGTGTCATATTTTTCGCGCATATTTAAAAAGAAAACTGGGGTAAGCCCAGGGAAATATCGACTT
TCTAACTAG

Upstream 100 bases:

>100_bases
TGAGGCACAAAGAGATGATTTAGGACAACACACTCTTCGCCCTTTGAAAGGCAAACAATAGCTGCTTGATATTCATATTT
CAGTTTGAGGGGGAATCAGC

Downstream 100 bases:

>100_bases
CTCAAATTCTTGTCTCACATCCGGTTTTTTTTATTTCTGATGAGCATAAAGCATGCTATGGTTAACAATAAATTAACATA
ACAATAATACTTGTTTTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MEVRRTAHWLGSSVRLLEKTEKDLILNTFTLIEHDTDVSILSEPSTQFAFFFIHSEEQYPLLLTALKLSINLNKKLILIH
SRPIELGSYYHSAVFDHLNLSLQNTQEWLKQLISRMNLRWYVELGGNASAQAADPMISQALQSLLNHIDNNISNVIREED
AASFCHYSITYFSKVFHKEIGLSFRDYLSNKRINLAKQLLLEDRHAKIAFIAYQCGYRDVSYFSRIFKKKTGVSPGKYRL
SN

Sequences:

>Translated_242_residues
MEVRRTAHWLGSSVRLLEKTEKDLILNTFTLIEHDTDVSILSEPSTQFAFFFIHSEEQYPLLLTALKLSINLNKKLILIH
SRPIELGSYYHSAVFDHLNLSLQNTQEWLKQLISRMNLRWYVELGGNASAQAADPMISQALQSLLNHIDNNISNVIREED
AASFCHYSITYFSKVFHKEIGLSFRDYLSNKRINLAKQLLLEDRHAKIAFIAYQCGYRDVSYFSRIFKKKTGVSPGKYRL
SN
>Mature_242_residues
MEVRRTAHWLGSSVRLLEKTEKDLILNTFTLIEHDTDVSILSEPSTQFAFFFIHSEEQYPLLLTALKLSINLNKKLILIH
SRPIELGSYYHSAVFDHLNLSLQNTQEWLKQLISRMNLRWYVELGGNASAQAADPMISQALQSLLNHIDNNISNVIREED
AASFCHYSITYFSKVFHKEIGLSFRDYLSNKRINLAKQLLLEDRHAKIAFIAYQCGYRDVSYFSRIFKKKTGVSPGKYRL
SN

Specific function: Unknown

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=103, Percent_Identity=34.9514563106796, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28019; Mature: 28019

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVRRTAHWLGSSVRLLEKTEKDLILNTFTLIEHDTDVSILSEPSTQFAFFFIHSEEQYP
CCCCHHHHHHCHHHHHHHHHHHHHHHHHHEEEECCCCCEEECCCCCEEEEEEEECCCCCC
LLLTALKLSINLNKKLILIHSRPIELGSYYHSAVFDHLNLSLQNTQEWLKQLISRMNLRW
CEEEEEEHEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEE
YVELGGNASAQAADPMISQALQSLLNHIDNNISNVIREEDAASFCHYSITYFSKVFHKEI
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLSFRDYLSNKRINLAKQLLLEDRHAKIAFIAYQCGYRDVSYFSRIFKKKTGVSPGKYRL
CCCHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEC
SN
CC
>Mature Secondary Structure
MEVRRTAHWLGSSVRLLEKTEKDLILNTFTLIEHDTDVSILSEPSTQFAFFFIHSEEQYP
CCCCHHHHHHCHHHHHHHHHHHHHHHHHHEEEECCCCCEEECCCCCEEEEEEEECCCCCC
LLLTALKLSINLNKKLILIHSRPIELGSYYHSAVFDHLNLSLQNTQEWLKQLISRMNLRW
CEEEEEEHEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEE
YVELGGNASAQAADPMISQALQSLLNHIDNNISNVIREEDAASFCHYSITYFSKVFHKEI
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLSFRDYLSNKRINLAKQLLLEDRHAKIAFIAYQCGYRDVSYFSRIFKKKTGVSPGKYRL
CCCHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEC
SN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704981; 9384377 [H]