Click here to switch to the map view.

The map label for this gene is yfgC [C]

Identifier: 37680692

GI number: 37680692

Start: 2538750

End: 2540234

Strand: Direct

Name: yfgC [C]

Synonym: VV2508

Alternate gene names: 37680692

Gene position: 2538750-2540234 (Clockwise)

Preceding gene: 37680690

Following gene: 37680693

Centisome position: 75.68

GC content: 49.09

Gene sequence:

>1485_bases
TTGCAGCTATATGGAGAGTTAATCATTACTATGTTAAAACGCGCGCGTACCATTATTAGTTTATCTGTCGCTTTGACTTT
AGCTTTGCCAACACCTGTTTGGGCCAATTCAATTGATTTGCCTGACATTGGGACAGCGGCAGGCGCCACGTTGTCGATCG
ATCAAGAATTAATCTATGGTGATGCCTACATGCGCATGCTGCGCAGCAGCAAACCCATCGTCAATGACCCAGTCATTAAC
GAGTATATCGATTCTCTCGGCCACCGCTTGGTTGCCAATGCCAACGATGTAAAAACGCCCTTTCATTTCTTCATGATCCG
TGATCGAAACATCAACGCATTCGCCTTTTTTGGTGGTTACGTCGCCTTGCACTCAGGCCTGTTTCTTCATGCTCGAACAG
AAAGTGAGTTGGCGTCCGTTGTGGCGCACGAAATTGCCCACGTCACTCAACGACATTTGGCTCGCAGCATGGAAGAGCAA
GCAAGACGCTCTCCTGCAACCCTTGCGGCATTAGCAGGCTCGCTGTTGCTGGCCATCGCCGCGCCAGAAGCGGGTATTGC
TGCAATCACTGCAACAACCGCAGGAAATATGCAAAGCCAGATCAACTACACGAGAAGTAATGAAAAAGAGGCCGATCGCT
TCGGCATCAATACGCTTGCAAAGGCAGGTTTTGATGTGCAAGCCATGCCCACTTTTTTCTCACGTTTGGCTGATGAATAC
CGTTACGCAAGCACGCCGCCACCGATGCTGCTGACGCACCCGCTGCCTGAAGATCGAATTACCGACAGCCGTGCTCGTGC
ACAATCGTATCCTCCGCATCGCGTGAATCCATCACTCGACTATCACCTCACTCGAGCTCGAATTGTCGCTCGCTACGCAG
GAATTGACGCCGATGCAGCGATGGACTGGTTTGCTCGTACGGAGAAAAAAGCAACGCCAGACCTCAAACCGGCCTTTGAA
TATGGCAGAGCGCTGGTGCATTTAGACAAAAAAGAATTAGATCAAGCTGAAACGATTTTGGCCCGATTAATTAAAAATGA
GGGTAACAATCCTTTCTATCTTGATGCGCTATCTGATCTTTATATCGAGCAGAAACAGCCAGAGAAAGCGATCGCAATGT
TAAAAAGTGCGTTAGAACGCATTCCCAACAACAAGGTTCTAACGATAAACTACGCCAATGCTTTGCTCGAAGCAGATAAA
ACCGAAGAAGCGATCCGTGTATTGCAACGTTATACGCATGATAATCCAGAAGACACCAATGGATGGCATCTGCTTTCGCG
CGCCAATATCGCCATTGGTAACAGTGGTGAAGACCTCGCGTCACGTGCGGAAATTTTGGCGCTGCAAGCGAACTGGAACA
AAGCGATCCAATACTATACGCAAGCCAGCCAACTGGCCGAGTTAGGGAGTTTGCAGCAGGCAAGATACGACGCGCGCATT
GACCAACTCATGGTCCAACGAGATCGCTTCCTCGCATTACAATAA

Upstream 100 bases:

>100_bases
GCCAGCATTTATCAAAGTTTGATTTGCAGTTTAAGTAAGGGACTGGCATTTTCTTTTGTAACACTTTACGAAACCAATTA
GCCAGCAATGGGTCTTAATA

Downstream 100 bases:

>100_bases
ATACATGGAGAATCCTATGTCAGTCGTGATTTATCACAATCCACGCTGCTCAAAGAGCCGTCAAACCCTCGAACTATTGG
AACAACATGGCGTGACGCCT

Product: putative Zn-dependent protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MQLYGELIITMLKRARTIISLSVALTLALPTPVWANSIDLPDIGTAAGATLSIDQELIYGDAYMRMLRSSKPIVNDPVIN
EYIDSLGHRLVANANDVKTPFHFFMIRDRNINAFAFFGGYVALHSGLFLHARTESELASVVAHEIAHVTQRHLARSMEEQ
ARRSPATLAALAGSLLLAIAAPEAGIAAITATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVQAMPTFFSRLADEY
RYASTPPPMLLTHPLPEDRITDSRARAQSYPPHRVNPSLDYHLTRARIVARYAGIDADAAMDWFARTEKKATPDLKPAFE
YGRALVHLDKKELDQAETILARLIKNEGNNPFYLDALSDLYIEQKQPEKAIAMLKSALERIPNNKVLTINYANALLEADK
TEEAIRVLQRYTHDNPEDTNGWHLLSRANIAIGNSGEDLASRAEILALQANWNKAIQYYTQASQLAELGSLQQARYDARI
DQLMVQRDRFLALQ

Sequences:

>Translated_494_residues
MQLYGELIITMLKRARTIISLSVALTLALPTPVWANSIDLPDIGTAAGATLSIDQELIYGDAYMRMLRSSKPIVNDPVIN
EYIDSLGHRLVANANDVKTPFHFFMIRDRNINAFAFFGGYVALHSGLFLHARTESELASVVAHEIAHVTQRHLARSMEEQ
ARRSPATLAALAGSLLLAIAAPEAGIAAITATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVQAMPTFFSRLADEY
RYASTPPPMLLTHPLPEDRITDSRARAQSYPPHRVNPSLDYHLTRARIVARYAGIDADAAMDWFARTEKKATPDLKPAFE
YGRALVHLDKKELDQAETILARLIKNEGNNPFYLDALSDLYIEQKQPEKAIAMLKSALERIPNNKVLTINYANALLEADK
TEEAIRVLQRYTHDNPEDTNGWHLLSRANIAIGNSGEDLASRAEILALQANWNKAIQYYTQASQLAELGSLQQARYDARI
DQLMVQRDRFLALQ
>Mature_494_residues
MQLYGELIITMLKRARTIISLSVALTLALPTPVWANSIDLPDIGTAAGATLSIDQELIYGDAYMRMLRSSKPIVNDPVIN
EYIDSLGHRLVANANDVKTPFHFFMIRDRNINAFAFFGGYVALHSGLFLHARTESELASVVAHEIAHVTQRHLARSMEEQ
ARRSPATLAALAGSLLLAIAAPEAGIAAITATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVQAMPTFFSRLADEY
RYASTPPPMLLTHPLPEDRITDSRARAQSYPPHRVNPSLDYHLTRARIVARYAGIDADAAMDWFARTEKKATPDLKPAFE
YGRALVHLDKKELDQAETILARLIKNEGNNPFYLDALSDLYIEQKQPEKAIAMLKSALERIPNNKVLTINYANALLEADK
TEEAIRVLQRYTHDNPEDTNGWHLLSRANIAIGNSGEDLASRAEILALQANWNKAIQYYTQASQLAELGSLQQARYDARI
DQLMVQRDRFLALQ

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=478, Percent_Identity=48.5355648535565, Blast_Score=439, Evalue=1e-124,
Organism=Escherichia coli, GI87082185, Length=200, Percent_Identity=26.5, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 55043; Mature: 55043

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLYGELIITMLKRARTIISLSVALTLALPTPVWANSIDLPDIGTAAGATLSIDQELIYG
CCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCEEEECHHHHHH
DAYMRMLRSSKPIVNDPVINEYIDSLGHRLVANANDVKTPFHFFMIRDRNINAFAFFGGY
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCEEEEEEECCCCCEEEEHHHH
VALHSGLFLHARTESELASVVAHEIAHVTQRHLARSMEEQARRSPATLAALAGSLLLAIA
HHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEE
APEAGIAAITATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVQAMPTFFSRLADEY
CCCCCEEEEEEECCCCHHHHCCCCCCCCHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHH
RYASTPPPMLLTHPLPEDRITDSRARAQSYPPHRVNPSLDYHLTRARIVARYAGIDADAA
CCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
MDWFARTEKKATPDLKPAFEYGRALVHLDKKELDQAETILARLIKNEGNNPFYLDALSDL
HHHHHHHHCCCCCCCCHHHHHCHHEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHH
YIEQKQPEKAIAMLKSALERIPNNKVLTINYANALLEADKTEEAIRVLQRYTHDNPEDTN
HHCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
GWHLLSRANIAIGNSGEDLASRAEILALQANWNKAIQYYTQASQLAELGSLQQARYDARI
CEEEEEECCEEECCCCHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQLMVQRDRFLALQ
HHHHHHHHHHCCCC
>Mature Secondary Structure
MQLYGELIITMLKRARTIISLSVALTLALPTPVWANSIDLPDIGTAAGATLSIDQELIYG
CCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCEEEECHHHHHH
DAYMRMLRSSKPIVNDPVINEYIDSLGHRLVANANDVKTPFHFFMIRDRNINAFAFFGGY
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCEEEEEEECCCCCEEEEHHHH
VALHSGLFLHARTESELASVVAHEIAHVTQRHLARSMEEQARRSPATLAALAGSLLLAIA
HHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEE
APEAGIAAITATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVQAMPTFFSRLADEY
CCCCCEEEEEEECCCCHHHHCCCCCCCCHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHH
RYASTPPPMLLTHPLPEDRITDSRARAQSYPPHRVNPSLDYHLTRARIVARYAGIDADAA
CCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
MDWFARTEKKATPDLKPAFEYGRALVHLDKKELDQAETILARLIKNEGNNPFYLDALSDL
HHHHHHHHCCCCCCCCHHHHHCHHEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHH
YIEQKQPEKAIAMLKSALERIPNNKVLTINYANALLEADKTEEAIRVLQRYTHDNPEDTN
HHCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
GWHLLSRANIAIGNSGEDLASRAEILALQANWNKAIQYYTQASQLAELGSLQQARYDARI
CEEEEEECCEEECCCCHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQLMVQRDRFLALQ
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]