Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
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Accession | NC_005139 |
Length | 3,354,505 |
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The map label for this gene is folD [H]
Identifier: 37680575
GI number: 37680575
Start: 2426525
End: 2427382
Strand: Direct
Name: folD [H]
Synonym: VV2391
Alternate gene names: 37680575
Gene position: 2426525-2427382 (Clockwise)
Preceding gene: 37680567
Following gene: 37680576
Centisome position: 72.34
GC content: 51.52
Gene sequence:
>858_bases ATGACTGCTCAAAATATCGATGGAACTCTCATTTCCCAAACTGTTCGATCCGAAGTCGCTGCTCGCGTAAAAGCTCGTGT AGCTGCGGGATTACGTGCGCCTGGCTTAGCCGTTGTGTTGGTTGGCGAAGATCCAGCGTCTCAAGTTTACGTTGGCAGCA AGCGTCGCGCGTGTGAGGAAGTGGGCTTTGTCTCTAAATCGTTTGATCTACCCGCTTCAACTTCAGAAGAAGAACTGCTG GCGCTGATCGATGAACTCAATAATGATGCTGAAATCGACGGTATTCTGGTTCAACTTCCTCTTCCTGCGGGCATTGACAG CACGCACGTGCTAGAAAGCATTCATCCAGAGAAAGATGTGGATGGTTTCCACCCGTACAACGTTGGCCGCTTAGCGCAGC GCATCCCTAAACTGCGTTCGTGCACACCAAAAGGCATCATTACGCTGCTTGAGCGTTACAACATCGCACTACGTGGTAAG CATGCGGTGATCGTGGGTGCATCAAACATTGTTGGTCGCCCAATGACACTCGAGCTACTGCTGGCAGGTTGTACCACGAC CACCTGTCACCGCTTCACGAAAGATCTTGAAGGCCATGTTCGCCAAGCTGATGTGCTCGTGGTTGCGGTCGGTAAGCCAA ATTTCATTCCTGGTGAATGGGTCAAAGAAGGCGCGATCGTGGTCGATGTCGGCATCAACCGCCTTGAATCGGGTAAGCTG ATTGGTGATGTGGAATATAATAAGGCTCGTGAACGCGCCAGCTTCATTACTCCAGTGCCCGGTGGTGTTGGCCCAATGAC TGTGGCCAGCCTCATCGAAAACACCATGCTTGCTTGCGAGCAATACCACACCAAATAA
Upstream 100 bases:
>100_bases TTAAAAACGACCCAAAGCAAACGTTTGCGTATAGATATTTATTTGATCATTTGCGACAATACGCGCCAAGTTTTTGCCAT TCGTATTCTTAAGGAAAGTC
Downstream 100 bases:
>100_bases GTCCTCTTCGGCGGGTCAAATCTTGGCCTGCCGAGACTCAAACTGGTTAAAACAGGCAGTTCCTGTTAGACTTTGCCGCC TGTTTCATCTCCCCTTTTTG
Product: bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
Products: NA
Alternate protein names: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase [H]
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MTAQNIDGTLISQTVRSEVAARVKARVAAGLRAPGLAVVLVGEDPASQVYVGSKRRACEEVGFVSKSFDLPASTSEEELL ALIDELNNDAEIDGILVQLPLPAGIDSTHVLESIHPEKDVDGFHPYNVGRLAQRIPKLRSCTPKGIITLLERYNIALRGK HAVIVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLEGHVRQADVLVVAVGKPNFIPGEWVKEGAIVVDVGINRLESGKL IGDVEYNKARERASFITPVPGGVGPMTVASLIENTMLACEQYHTK
Sequences:
>Translated_285_residues MTAQNIDGTLISQTVRSEVAARVKARVAAGLRAPGLAVVLVGEDPASQVYVGSKRRACEEVGFVSKSFDLPASTSEEELL ALIDELNNDAEIDGILVQLPLPAGIDSTHVLESIHPEKDVDGFHPYNVGRLAQRIPKLRSCTPKGIITLLERYNIALRGK HAVIVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLEGHVRQADVLVVAVGKPNFIPGEWVKEGAIVVDVGINRLESGKL IGDVEYNKARERASFITPVPGGVGPMTVASLIENTMLACEQYHTK >Mature_284_residues TAQNIDGTLISQTVRSEVAARVKARVAAGLRAPGLAVVLVGEDPASQVYVGSKRRACEEVGFVSKSFDLPASTSEEELLA LIDELNNDAEIDGILVQLPLPAGIDSTHVLESIHPEKDVDGFHPYNVGRLAQRIPKLRSCTPKGIITLLERYNIALRGKH AVIVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLEGHVRQADVLVVAVGKPNFIPGEWVKEGAIVVDVGINRLESGKLI GDVEYNKARERASFITPVPGGVGPMTVASLIENTMLACEQYHTK
Specific function: Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate [H]
COG id: COG0190
COG function: function code H; 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family [H]
Homologues:
Organism=Homo sapiens, GI222136639, Length=300, Percent_Identity=42.3333333333333, Blast_Score=224, Evalue=9e-59, Organism=Homo sapiens, GI94721354, Length=291, Percent_Identity=44.6735395189003, Blast_Score=221, Evalue=4e-58, Organism=Homo sapiens, GI222418558, Length=291, Percent_Identity=42.2680412371134, Blast_Score=220, Evalue=1e-57, Organism=Homo sapiens, GI36796743, Length=209, Percent_Identity=29.6650717703349, Blast_Score=87, Evalue=1e-17, Organism=Escherichia coli, GI1786741, Length=283, Percent_Identity=73.8515901060071, Blast_Score=442, Evalue=1e-125, Organism=Caenorhabditis elegans, GI17568735, Length=289, Percent_Identity=40.4844290657439, Blast_Score=183, Evalue=9e-47, Organism=Saccharomyces cerevisiae, GI6321643, Length=299, Percent_Identity=42.1404682274247, Blast_Score=229, Evalue=5e-61, Organism=Saccharomyces cerevisiae, GI6319558, Length=285, Percent_Identity=41.0526315789474, Blast_Score=223, Evalue=3e-59, Organism=Saccharomyces cerevisiae, GI6322933, Length=311, Percent_Identity=25.4019292604502, Blast_Score=86, Evalue=9e-18, Organism=Drosophila melanogaster, GI17136816, Length=294, Percent_Identity=47.9591836734694, Blast_Score=251, Evalue=3e-67, Organism=Drosophila melanogaster, GI17136818, Length=294, Percent_Identity=47.9591836734694, Blast_Score=251, Evalue=4e-67, Organism=Drosophila melanogaster, GI62472483, Length=291, Percent_Identity=41.2371134020619, Blast_Score=208, Evalue=4e-54, Organism=Drosophila melanogaster, GI45551871, Length=291, Percent_Identity=41.2371134020619, Blast_Score=208, Evalue=4e-54, Organism=Drosophila melanogaster, GI24645718, Length=291, Percent_Identity=41.2371134020619, Blast_Score=208, Evalue=4e-54, Organism=Drosophila melanogaster, GI17137370, Length=291, Percent_Identity=41.2371134020619, Blast_Score=208, Evalue=4e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR000672 - InterPro: IPR020630 - InterPro: IPR020867 - InterPro: IPR020631 [H]
Pfam domain/function: PF00763 THF_DHG_CYH; PF02882 THF_DHG_CYH_C [H]
EC number: =1.5.1.5; =3.5.4.9 [H]
Molecular weight: Translated: 30619; Mature: 30487
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: PS00766 THF_DHG_CYH_1 ; PS00767 THF_DHG_CYH_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAQNIDGTLISQTVRSEVAARVKARVAAGLRAPGLAVVLVGEDPASQVYVGSKRRACEE CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCHHHHHHH VGFVSKSFDLPASTSEEELLALIDELNNDAEIDGILVQLPLPAGIDSTHVLESIHPEKDV HCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCC DGFHPYNVGRLAQRIPKLRSCTPKGIITLLERYNIALRGKHAVIVGASNIVGRPMTLELL CCCCCCCHHHHHHHCHHHHCCCHHHHHHHHHHCCEEEECCEEEEEECHHHCCCCCEEEHH LAGCTTTTCHRFTKDLEGHVRQADVLVVAVGKPNFIPGEWVKEGAIVVDVGINRLESGKL HHCCCHHHHHHHHHHHHHHCEEEEEEEEEECCCCCCCCHHHHCCCEEEEECCCCCCCCCE IGDVEYNKARERASFITPVPGGVGPMTVASLIENTMLACEQYHTK EEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TAQNIDGTLISQTVRSEVAARVKARVAAGLRAPGLAVVLVGEDPASQVYVGSKRRACEE CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCHHHHHHH VGFVSKSFDLPASTSEEELLALIDELNNDAEIDGILVQLPLPAGIDSTHVLESIHPEKDV HCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCC DGFHPYNVGRLAQRIPKLRSCTPKGIITLLERYNIALRGKHAVIVGASNIVGRPMTLELL CCCCCCCHHHHHHHCHHHHCCCHHHHHHHHHHCCEEEECCEEEEEECHHHCCCCCEEEHH LAGCTTTTCHRFTKDLEGHVRQADVLVVAVGKPNFIPGEWVKEGAIVVDVGINRLESGKL HHCCCHHHHHHHHHHHHHHCEEEEEEEEEECCCCCCCCHHHHCCCEEEEECCCCCCCCCE IGDVEYNKARERASFITPVPGGVGPMTVASLIENTMLACEQYHTK EEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA