| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is hsdR [H]
Identifier: 37680384
GI number: 37680384
Start: 2204823
End: 2207615
Strand: Direct
Name: hsdR [H]
Synonym: VV2200
Alternate gene names: 37680384
Gene position: 2204823-2207615 (Clockwise)
Preceding gene: 37680383
Following gene: 37680399
Centisome position: 65.73
GC content: 46.37
Gene sequence:
>2793_bases GTGTCCTTTATTCAACCCTCTGGCCTAGATTTGCTTCTGCCAAGCATTCACGAGGCGATTGAACGTAAAAAGTCACACCA GCGCCCCTTAAAGTTGCGCATCCTAACGTCAGATTACCTGCACATCACTCATCCTATTGCGTTGCGCTCTCTGATTGAAC TAGAAGGAGATGAGATAGAAATTAAGATTTTTGAAGCCAATAACCGCAGTTTTCACCTCAAATCGTACATCTTTGTTCGC AGCGATGAAGCTCGTTCCATTTACCAAGGAGCTGCTTTTGTTGGCTCTAACAACATCAGTAAAACCGCACTCACCGATGC CCATGAATGGTGCCTACGTTTAGATTACCAGCAACCAGACAACTCCCCTCAAGCGGCGCAGTTTCACAATATCCGAACAC AGTTTGACAAACTGTTTCATCATCCATCTGCCATATTGCTGACGGATGAATGGATTGACAGCTACATCAGAAGAAGAACA CCACCCAAGCTTTCAGCAGTCGGTGATACGACGCTATTGGATAACGAAGAATATTCACCCAACTCGGCACAGTTAGACGC ATTGCAACGACTCAGCGAGACTCGTCAAAAAGGCAATGTTCGTGGATTGGTTGTGATGGGCACTGGCATGGGAAAAACAT GGTTATCTGCGTTTGATGCGAAACAACTGGAAGCAAAGCGAGTTCTGTTCGTTGCTCACCGCGAAGAAATTCTGACCCAA GCACTGATGACTTTCGCTAAACTTTGGCCCCAAAAATCCGCAGGCTACTATCACGGTAAGAGCAAACAAAAAAACAAAGA GATGCTGTTTGCCTCAGTGCAGAGTTTAGGTAAAACAGCACAACTCAAACACTTTTCGCCCGACTACTTTGATTACATCG TGGTTGATGAATTTCATCATGCGAGCGCCAAAACGTATCTTAATATCCTCAATCACTTTGAACCTAAATTTTTACTCGGG CTAACTGCTACTCCAGAACGGACAGACCAAGCGAACATCCTCTCGCTTTGCCACGACAACTTAGTGTTTGAACGTAACTT AGTGCATGGTATCAATGATGAAATTCTGGTGCCTTTTCACTACCACGGCATCTGGGATGACTCGGTCGATTATCAAGAGA TCCCATGGCGAAATGGTAAATTTGACCCCACCGCCCTTGACGCCCAGTTTGCAACCACACGACGTGCCAAACATATTTTT AAACATTGGCAAAACAGGCAACAAACTCGCACCTTGGCGTTTTGTGTATCCAAAAAGCACGCTGATTTTATGGCGCAGCA CTTCAATCAAACTTTTGCAGATAAAGGCTTGAGGGCGCTTTCTGTACACAGTGATTCCTCCATTCGTCGTAATGAAGCGT TAAGCATGCTGGATAAAGGAGAAATTCAAATTCTCTTCTCGGTTGATCTGTTCAACGAAGGGACTGATTTACCCTCAATC GATACCGTGCTAATGCTGCGCCCGACTGAATCCAACATCGTTTTCATTCAACAATTGGGCCGAGGACTTCGTCGTCACAC GGACAAATCACACTTGGTGGTATTGGATTTCATTGGGAACCATCGCTCGTTTTTGAACAAGAAAGAAATTTTAGGGATCA GCACATCAAGCTCACTCGAACAGTTGAGTGATAAGTCACAAACACGGCCCGAATTAGGCAAAGGTTGCTTTACCAACATC GATCCGAAAATCATCGATTTTTGGCAAACGCTGACAAAGCAGCTTCGCTATTCTGCTCAAGAAGAATTTGAACATTTGAC CAACCATTTGGGCCATCGACCTCGTGCAGTCGAGTATTACCGAGCAGGTTACGACCTGGCCAAAGTGAACAAGCAGCACG GTAGTTGGCTAGAGCTGGTCGCAAGTATGGACAAGGATCCGGAGTTAGATTACCTAGTTCGCGAACATCGTGACTTCTTT GCCAATGCCATCCAAAAAGCAAGCATGACCAAGAGTTTTAAAGCGATATTGCTTGAAGCCTACCTCGAGCTGGATGGGTT CAGAGATGCCCCGAGTATCGAAGTGCTCGCGAGTAAAAGTTGGCATGTGCTCTCTCGTTATCCCAAGCTAAAGGCATCCG ACCTGTCAGAGATCAACCAACGCTTAACCGCAGACTCTCAGGCATGGTTGAAATATTGGCTTAGTAACCCTATCAACGCA TTTGTAGGTGGAAACAAAACCAAGAACCGCGTTTGGTTTAAGCTTGTCGACGGAAAGCTCAAAGCTGACTTTGATGTCGC CCCACTCCAGCAGCAAACATTCCATGACTTTGTCAAAGAGCTCGTGGACCTACAACTTGCTCAGTATTCAGACAGGCCAC CTAAACAGACTCATCAAACAGTGGCACAACCGACCACTCCAGCAGAGGCAGCCAATGAAGGAACCTTGTTGCCCTACTAC CCAAACCTTAAGATCGCTTGTGGTCATTTTAAGACCGGATCTCACGAGGAGGTTGAACACATCCCCGTTGATATGGCTAA CCTCAATCCTCAAAAACATTTCTTGGCCAGAGCCTCTGGCAATTCGATGAACGGAGGCAAGACACCCATTTTAGATGGCG ATTTGCTGTTACTCGAGTTTGTGACGCCGATATCCGCTGGCTCCATCACCGGCAACACCATGGCGATCGAAATCCAAGAT AACTCGGGCGAGAATCAGTACCTACTACGTGTCGTGCAGAAGGATGCACAAGGGCGCTACTGGCTAAAAGCGAACAACCC AGATTACGAGCTAATGCCTGCCAATGACTCGATGAAGACATTTGCGAGGCTGAAAAAGGTTATTACGCAGTAA
Upstream 100 bases:
>100_bases CAAATCAGTCGCTTACTCTCAATTAACCACTGGTGGTGAAGACCCTCTGCTGCCGCAGCTGATCCACGCGATTAACCATG CGACCGAGATAGAGATTGCA
Downstream 100 bases:
>100_bases CATTATTCATTATCGTATGCATCAGAAAAACAGCGTTGGCATTACTTTGGATATTACTTGAAACAGTGGATTTGGTTGGA CAAACTCGGCAAAATCACAA
Product: DNA or RNA helicase
Products: NA
Alternate protein names: R.EcoAI [H]
Number of amino acids: Translated: 930; Mature: 929
Protein sequence:
>930_residues MSFIQPSGLDLLLPSIHEAIERKKSHQRPLKLRILTSDYLHITHPIALRSLIELEGDEIEIKIFEANNRSFHLKSYIFVR SDEARSIYQGAAFVGSNNISKTALTDAHEWCLRLDYQQPDNSPQAAQFHNIRTQFDKLFHHPSAILLTDEWIDSYIRRRT PPKLSAVGDTTLLDNEEYSPNSAQLDALQRLSETRQKGNVRGLVVMGTGMGKTWLSAFDAKQLEAKRVLFVAHREEILTQ ALMTFAKLWPQKSAGYYHGKSKQKNKEMLFASVQSLGKTAQLKHFSPDYFDYIVVDEFHHASAKTYLNILNHFEPKFLLG LTATPERTDQANILSLCHDNLVFERNLVHGINDEILVPFHYHGIWDDSVDYQEIPWRNGKFDPTALDAQFATTRRAKHIF KHWQNRQQTRTLAFCVSKKHADFMAQHFNQTFADKGLRALSVHSDSSIRRNEALSMLDKGEIQILFSVDLFNEGTDLPSI DTVLMLRPTESNIVFIQQLGRGLRRHTDKSHLVVLDFIGNHRSFLNKKEILGISTSSSLEQLSDKSQTRPELGKGCFTNI DPKIIDFWQTLTKQLRYSAQEEFEHLTNHLGHRPRAVEYYRAGYDLAKVNKQHGSWLELVASMDKDPELDYLVREHRDFF ANAIQKASMTKSFKAILLEAYLELDGFRDAPSIEVLASKSWHVLSRYPKLKASDLSEINQRLTADSQAWLKYWLSNPINA FVGGNKTKNRVWFKLVDGKLKADFDVAPLQQQTFHDFVKELVDLQLAQYSDRPPKQTHQTVAQPTTPAEAANEGTLLPYY PNLKIACGHFKTGSHEEVEHIPVDMANLNPQKHFLARASGNSMNGGKTPILDGDLLLLEFVTPISAGSITGNTMAIEIQD NSGENQYLLRVVQKDAQGRYWLKANNPDYELMPANDSMKTFARLKKVITQ
Sequences:
>Translated_930_residues MSFIQPSGLDLLLPSIHEAIERKKSHQRPLKLRILTSDYLHITHPIALRSLIELEGDEIEIKIFEANNRSFHLKSYIFVR SDEARSIYQGAAFVGSNNISKTALTDAHEWCLRLDYQQPDNSPQAAQFHNIRTQFDKLFHHPSAILLTDEWIDSYIRRRT PPKLSAVGDTTLLDNEEYSPNSAQLDALQRLSETRQKGNVRGLVVMGTGMGKTWLSAFDAKQLEAKRVLFVAHREEILTQ ALMTFAKLWPQKSAGYYHGKSKQKNKEMLFASVQSLGKTAQLKHFSPDYFDYIVVDEFHHASAKTYLNILNHFEPKFLLG LTATPERTDQANILSLCHDNLVFERNLVHGINDEILVPFHYHGIWDDSVDYQEIPWRNGKFDPTALDAQFATTRRAKHIF KHWQNRQQTRTLAFCVSKKHADFMAQHFNQTFADKGLRALSVHSDSSIRRNEALSMLDKGEIQILFSVDLFNEGTDLPSI DTVLMLRPTESNIVFIQQLGRGLRRHTDKSHLVVLDFIGNHRSFLNKKEILGISTSSSLEQLSDKSQTRPELGKGCFTNI DPKIIDFWQTLTKQLRYSAQEEFEHLTNHLGHRPRAVEYYRAGYDLAKVNKQHGSWLELVASMDKDPELDYLVREHRDFF ANAIQKASMTKSFKAILLEAYLELDGFRDAPSIEVLASKSWHVLSRYPKLKASDLSEINQRLTADSQAWLKYWLSNPINA FVGGNKTKNRVWFKLVDGKLKADFDVAPLQQQTFHDFVKELVDLQLAQYSDRPPKQTHQTVAQPTTPAEAANEGTLLPYY PNLKIACGHFKTGSHEEVEHIPVDMANLNPQKHFLARASGNSMNGGKTPILDGDLLLLEFVTPISAGSITGNTMAIEIQD NSGENQYLLRVVQKDAQGRYWLKANNPDYELMPANDSMKTFARLKKVITQ >Mature_929_residues SFIQPSGLDLLLPSIHEAIERKKSHQRPLKLRILTSDYLHITHPIALRSLIELEGDEIEIKIFEANNRSFHLKSYIFVRS DEARSIYQGAAFVGSNNISKTALTDAHEWCLRLDYQQPDNSPQAAQFHNIRTQFDKLFHHPSAILLTDEWIDSYIRRRTP PKLSAVGDTTLLDNEEYSPNSAQLDALQRLSETRQKGNVRGLVVMGTGMGKTWLSAFDAKQLEAKRVLFVAHREEILTQA LMTFAKLWPQKSAGYYHGKSKQKNKEMLFASVQSLGKTAQLKHFSPDYFDYIVVDEFHHASAKTYLNILNHFEPKFLLGL TATPERTDQANILSLCHDNLVFERNLVHGINDEILVPFHYHGIWDDSVDYQEIPWRNGKFDPTALDAQFATTRRAKHIFK HWQNRQQTRTLAFCVSKKHADFMAQHFNQTFADKGLRALSVHSDSSIRRNEALSMLDKGEIQILFSVDLFNEGTDLPSID TVLMLRPTESNIVFIQQLGRGLRRHTDKSHLVVLDFIGNHRSFLNKKEILGISTSSSLEQLSDKSQTRPELGKGCFTNID PKIIDFWQTLTKQLRYSAQEEFEHLTNHLGHRPRAVEYYRAGYDLAKVNKQHGSWLELVASMDKDPELDYLVREHRDFFA NAIQKASMTKSFKAILLEAYLELDGFRDAPSIEVLASKSWHVLSRYPKLKASDLSEINQRLTADSQAWLKYWLSNPINAF VGGNKTKNRVWFKLVDGKLKADFDVAPLQQQTFHDFVKELVDLQLAQYSDRPPKQTHQTVAQPTTPAEAANEGTLLPYYP NLKIACGHFKTGSHEEVEHIPVDMANLNPQKHFLARASGNSMNGGKTPILDGDLLLLEFVTPISAGSITGNTMAIEIQDN SGENQYLLRVVQKDAQGRYWLKANNPDYELMPANDSMKTFARLKKVITQ
Specific function: The EcoAI enzyme recognizes 5'-GAGN(7)GTCA-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG1061
COG function: function code KL; DNA or RNA helicases of superfamily II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788511, Length=342, Percent_Identity=26.3157894736842, Blast_Score=85, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6320539, Length=358, Percent_Identity=30.4469273743017, Blast_Score=157, Evalue=8e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 106164; Mature: 106032
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: PS00133 CARBOXYPEPT_ZN_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFIQPSGLDLLLPSIHEAIERKKSHQRPLKLRILTSDYLHITHPIALRSLIELEGDEIE CCCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCHHHHHHHHHCCCCEEE IKIFEANNRSFHLKSYIFVRSDEARSIYQGAAFVGSNNISKTALTDAHEWCLRLDYQQPD EEEEECCCCEEEEEEEEEEECCCHHHHHHCCCEECCCCCCHHHHHHHHHHHHEECCCCCC NSPQAAQFHNIRTQFDKLFHHPSAILLTDEWIDSYIRRRTPPKLSAVGDTTLLDNEEYSP CCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCC NSAQLDALQRLSETRQKGNVRGLVVMGTGMGKTWLSAFDAKQLEAKRVLFVAHREEILTQ CHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHH ALMTFAKLWPQKSAGYYHGKSKQKNKEMLFASVQSLGKTAQLKHFSPDYFDYIVVDEFHH HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCHH ASAKTYLNILNHFEPKFLLGLTATPERTDQANILSLCHDNLVFERNLVHGINDEILVPFH HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEHHHHCCCCCCEEEEEE YHGIWDDSVDYQEIPWRNGKFDPTALDAQFATTRRAKHIFKHWQNRQQTRTLAFCVSKKH ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH ADFMAQHFNQTFADKGLRALSVHSDSSIRRNEALSMLDKGEIQILFSVDLFNEGTDLPSI HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC DTVLMLRPTESNIVFIQQLGRGLRRHTDKSHLVVLDFIGNHRSFLNKKEILGISTSSSLE CEEEEEECCCCCEEEHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCHHHEEEECCCHHHH QLSDKSQTRPELGKGCFTNIDPKIIDFWQTLTKQLRYSAQEEFEHLTNHLGHRPRAVEYY HHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH RAGYDLAKVNKQHGSWLELVASMDKDPELDYLVREHRDFFANAIQKASMTKSFKAILLEA HCCCCHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLELDGFRDAPSIEVLASKSWHVLSRYPKLKASDLSEINQRLTADSQAWLKYWLSNPINA HHHHCCCCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEE FVGGNKTKNRVWFKLVDGKLKADFDVAPLQQQTFHDFVKELVDLQLAQYSDRPPKQTHQT HCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH VAQPTTPAEAANEGTLLPYYPNLKIACGHFKTGSHEEVEHIPVDMANLNPQKHFLARASG HCCCCCCHHCCCCCCEEEECCCCEEEECCCCCCCCCCHHHCCCCHHCCCHHHHHEEECCC NSMNGGKTPILDGDLLLLEFVTPISAGSITGNTMAIEIQDNSGENQYLLRVVQKDAQGRY CCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCE WLKANNPDYELMPANDSMKTFARLKKVITQ EEEECCCCEEEEECCCHHHHHHHHHHHHCC >Mature Secondary Structure SFIQPSGLDLLLPSIHEAIERKKSHQRPLKLRILTSDYLHITHPIALRSLIELEGDEIE CCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCHHHHHHHHHCCCCEEE IKIFEANNRSFHLKSYIFVRSDEARSIYQGAAFVGSNNISKTALTDAHEWCLRLDYQQPD EEEEECCCCEEEEEEEEEEECCCHHHHHHCCCEECCCCCCHHHHHHHHHHHHEECCCCCC NSPQAAQFHNIRTQFDKLFHHPSAILLTDEWIDSYIRRRTPPKLSAVGDTTLLDNEEYSP CCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCC NSAQLDALQRLSETRQKGNVRGLVVMGTGMGKTWLSAFDAKQLEAKRVLFVAHREEILTQ CHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHH ALMTFAKLWPQKSAGYYHGKSKQKNKEMLFASVQSLGKTAQLKHFSPDYFDYIVVDEFHH HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCHH ASAKTYLNILNHFEPKFLLGLTATPERTDQANILSLCHDNLVFERNLVHGINDEILVPFH HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEHHHHCCCCCCEEEEEE YHGIWDDSVDYQEIPWRNGKFDPTALDAQFATTRRAKHIFKHWQNRQQTRTLAFCVSKKH ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH ADFMAQHFNQTFADKGLRALSVHSDSSIRRNEALSMLDKGEIQILFSVDLFNEGTDLPSI HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC DTVLMLRPTESNIVFIQQLGRGLRRHTDKSHLVVLDFIGNHRSFLNKKEILGISTSSSLE CEEEEEECCCCCEEEHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCHHHEEEECCCHHHH QLSDKSQTRPELGKGCFTNIDPKIIDFWQTLTKQLRYSAQEEFEHLTNHLGHRPRAVEYY HHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH RAGYDLAKVNKQHGSWLELVASMDKDPELDYLVREHRDFFANAIQKASMTKSFKAILLEA HCCCCHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLELDGFRDAPSIEVLASKSWHVLSRYPKLKASDLSEINQRLTADSQAWLKYWLSNPINA HHHHCCCCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEE FVGGNKTKNRVWFKLVDGKLKADFDVAPLQQQTFHDFVKELVDLQLAQYSDRPPKQTHQT HCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH VAQPTTPAEAANEGTLLPYYPNLKIACGHFKTGSHEEVEHIPVDMANLNPQKHFLARASG HCCCCCCHHCCCCCCEEEECCCCEEEECCCCCCCCCCHHHCCCCHHCCCHHHHHEEECCC NSMNGGKTPILDGDLLLLEFVTPISAGSITGNTMAIEIQDNSGENQYLLRVVQKDAQGRY CCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCE WLKANNPDYELMPANDSMKTFARLKKVITQ EEEECCCCEEEEECCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]