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The map label for this gene is yidZ [H]

Identifier: 37680245

GI number: 37680245

Start: 2061274

End: 2062191

Strand: Direct

Name: yidZ [H]

Synonym: VV2061

Alternate gene names: 37680245

Gene position: 2061274-2062191 (Clockwise)

Preceding gene: 37680244

Following gene: 37680250

Centisome position: 61.45

GC content: 48.04

Gene sequence:

>918_bases
ATGGATTACATTTCTCTTTCTCGAATTAGCCTTAAGCATTTAACCGTTTTGCACGTTTTGTTAACCACTCACAGCGTGAC
AAGCGCGGCGGAGCAACTTTGCGTCACCCCCTCTTGTGTAAGCAAGATTTTGTCTCAATTACGCAGTGTGCTAAACGATG
AACTCTTTTATCGCGATGGAACCCAACTGATCCCCACCTCTTATGCACTGAGCATCGGTCCAGCCATTCACGGCATTCTT
TCCAGTATGAACGGGGTGATTCACCAAGGCACATTTGACGCAAACTCATACACTGGGACCTTCTCACTCTCCATGCGTGA
AAGTACCTTTGAAGTGTTTGCTGACACGTTCAGCCAGATCCTCCAACAAACCCCCAAAGCGCATCTTCATATATACGCTA
AGGAGCAGCATGGCTTTGAGGCTCTGCTACGCGGCCAGGTTGATTTTATTCTGTTGCCCCATGACATTAGCCAACCTCCA
ACCATGAACCGTGAGTTGATTTGGCATACGATCAAACGCGACGAGATGATCTGCTTAATGAATAAGGCACATCCGGCGCA
GCAAACCGACTTTACCATCGAGGATTACCTGTCATTCCAACACATTGGCATTCACGACAAAGAGTTGGCGACACCCTACT
TCGAGCAAACCTTGATTCAGAGCCATAAAGCACGTGAGATCGCCCTTTCGGTCGCAGATTTTGGCGCGGCGGCAGTGATG
TGCCATCGTACCCCATTGCTTTTTACTTGCTCAAAACTGTGGGCAGAGACGGCTTTACAAGCCAAAGGGCTCATTCAGAA
GAGCTTGCCGTTTGACTATGGCCAAGTCGCGTATAGCTTGGTGTATAACAAACAGAGCTTGAATGATCCGGCGCTGACTT
GGTTAAAAAGCCAGCTTCATCAACTCAATGAGAAGTAG

Upstream 100 bases:

>100_bases
CACGGTTTTTCTTTTTATTGGCAACATCTCTCACCAACAACGCTTGTTTCCCCATGAAAATGTGGTGTAATCCATGAAAC
GCTGAGTTGAAACACATTTT

Downstream 100 bases:

>100_bases
CCGTTTCAACGACTAAGCAATGTCTCGATAGAGCGGCGTTTTCGGTAAGGCGATTCGATGTGGGATTCGGCGTTTCAACG
CCTGATAGAAACCGTTCATC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDYISLSRISLKHLTVLHVLLTTHSVTSAAEQLCVTPSCVSKILSQLRSVLNDELFYRDGTQLIPTSYALSIGPAIHGIL
SSMNGVIHQGTFDANSYTGTFSLSMRESTFEVFADTFSQILQQTPKAHLHIYAKEQHGFEALLRGQVDFILLPHDISQPP
TMNRELIWHTIKRDEMICLMNKAHPAQQTDFTIEDYLSFQHIGIHDKELATPYFEQTLIQSHKAREIALSVADFGAAAVM
CHRTPLLFTCSKLWAETALQAKGLIQKSLPFDYGQVAYSLVYNKQSLNDPALTWLKSQLHQLNEK

Sequences:

>Translated_305_residues
MDYISLSRISLKHLTVLHVLLTTHSVTSAAEQLCVTPSCVSKILSQLRSVLNDELFYRDGTQLIPTSYALSIGPAIHGIL
SSMNGVIHQGTFDANSYTGTFSLSMRESTFEVFADTFSQILQQTPKAHLHIYAKEQHGFEALLRGQVDFILLPHDISQPP
TMNRELIWHTIKRDEMICLMNKAHPAQQTDFTIEDYLSFQHIGIHDKELATPYFEQTLIQSHKAREIALSVADFGAAAVM
CHRTPLLFTCSKLWAETALQAKGLIQKSLPFDYGQVAYSLVYNKQSLNDPALTWLKSQLHQLNEK
>Mature_305_residues
MDYISLSRISLKHLTVLHVLLTTHSVTSAAEQLCVTPSCVSKILSQLRSVLNDELFYRDGTQLIPTSYALSIGPAIHGIL
SSMNGVIHQGTFDANSYTGTFSLSMRESTFEVFADTFSQILQQTPKAHLHIYAKEQHGFEALLRGQVDFILLPHDISQPP
TMNRELIWHTIKRDEMICLMNKAHPAQQTDFTIEDYLSFQHIGIHDKELATPYFEQTLIQSHKAREIALSVADFGAAAVM
CHRTPLLFTCSKLWAETALQAKGLIQKSLPFDYGQVAYSLVYNKQSLNDPALTWLKSQLHQLNEK

Specific function: Involved in anaerobic NO protection [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=299, Percent_Identity=24.7491638795987, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081684, Length=299, Percent_Identity=21.7391304347826, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34360; Mature: 34360

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYISLSRISLKHLTVLHVLLTTHSVTSAAEQLCVTPSCVSKILSQLRSVLNDELFYRDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHEECCC
TQLIPTSYALSIGPAIHGILSSMNGVIHQGTFDANSYTGTFSLSMRESTFEVFADTFSQI
CEECCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHH
LQQTPKAHLHIYAKEQHGFEALLRGQVDFILLPHDISQPPTMNRELIWHTIKRDEMICLM
HHHCCCCEEEEEEECCCCHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEE
NKAHPAQQTDFTIEDYLSFQHIGIHDKELATPYFEQTLIQSHKAREIALSVADFGAAAVM
CCCCCCCCCCCCHHHHHCHHHCCCCCHHHCCHHHHHHHHHHHCHHHHEEEHHHCCHHHHH
CHRTPLLFTCSKLWAETALQAKGLIQKSLPFDYGQVAYSLVYNKQSLNDPALTWLKSQLH
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
QLNEK
HHCCC
>Mature Secondary Structure
MDYISLSRISLKHLTVLHVLLTTHSVTSAAEQLCVTPSCVSKILSQLRSVLNDELFYRDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHEECCC
TQLIPTSYALSIGPAIHGILSSMNGVIHQGTFDANSYTGTFSLSMRESTFEVFADTFSQI
CEECCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHH
LQQTPKAHLHIYAKEQHGFEALLRGQVDFILLPHDISQPPTMNRELIWHTIKRDEMICLM
HHHCCCCEEEEEEECCCCHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEE
NKAHPAQQTDFTIEDYLSFQHIGIHDKELATPYFEQTLIQSHKAREIALSVADFGAAAVM
CCCCCCCCCCCCHHHHHCHHHCCCCCHHHCCHHHHHHHHHHHCHHHHEEEHHHCCHHHHH
CHRTPLLFTCSKLWAETALQAKGLIQKSLPFDYGQVAYSLVYNKQSLNDPALTWLKSQLH
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
QLNEK
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA