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The map label for this gene is petJ [H]

Identifier: 37521549

GI number: 37521549

Start: 2128705

End: 2129049

Strand: Reverse

Name: petJ [H]

Synonym: gll1980

Alternate gene names: 37521549

Gene position: 2129049-2128705 (Counterclockwise)

Preceding gene: 37521552

Following gene: 37521548

Centisome position: 45.7

GC content: 51.88

Gene sequence:

>345_bases
ATGAAACAACTTGTCGGCGGTTTATTGTTGAGCGCTGTGGGTATTGTCTTTGCCGCATCATCGCTGCAAGCCGCAGCCGA
TCTCGCCCAGGGTGAGAAAGTGTTCAAAGCCAATTGCGCCATGTGCCATGCGGGGGGACGCAACACGGTCAACCCGGCTA
AAACCTTGAAGATCGAAGATCTCAAGAAGTACAAGATGGACACGGCCGCTGCCATTTCGGCACAGCTTTACAACGGCAAG
GGTGCAATGCCTGCGTTCGGAAAAAATGGAAAGTTAAAGCAGGATCAAATCGATAGTGTCACCGCCTACGTGCTCGATCA
GGCGAACAAAGGCTGGAAAAAGTAG

Upstream 100 bases:

>100_bases
AAGATTTAAGCTGAGGGGCGGGTTTGACACGATGTCTTTTGCACTCGCTTCACAACGGTCCTACGATAAAAATCGAAATC
AGTCATTCCGCGAGCTGTAC

Downstream 100 bases:

>100_bases
CAGCCGTTCGGGCGGTTTGCACGAAGCGATAGGTTCTCGACAGCAGGATTATGCGTGGACAATGGGTCGCCGGAAAGCCG
ATGTTGTGGTCGTCTTTTCT

Product: cytochrome c6

Products: NA

Alternate protein names: Cytochrome c-553; Cytochrome c553; Soluble cytochrome f [H]

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MKQLVGGLLLSAVGIVFAASSLQAAADLAQGEKVFKANCAMCHAGGRNTVNPAKTLKIEDLKKYKMDTAAAISAQLYNGK
GAMPAFGKNGKLKQDQIDSVTAYVLDQANKGWKK

Sequences:

>Translated_114_residues
MKQLVGGLLLSAVGIVFAASSLQAAADLAQGEKVFKANCAMCHAGGRNTVNPAKTLKIEDLKKYKMDTAAAISAQLYNGK
GAMPAFGKNGKLKQDQIDSVTAYVLDQANKGWKK
>Mature_114_residues
MKQLVGGLLLSAVGIVFAASSLQAAADLAQGEKVFKANCAMCHAGGRNTVNPAKTLKIEDLKKYKMDTAAAISAQLYNGK
GAMPAFGKNGKLKQDQIDSVTAYVLDQANKGWKK

Specific function: Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis [H]

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cellular thylakoid lumen (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PetJ subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 12016; Mature: 12016

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLVGGLLLSAVGIVFAASSLQAAADLAQGEKVFKANCAMCHAGGRNTVNPAKTLKIED
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEECCCCCCCCCCCEEEHHH
LKKYKMDTAAAISAQLYNGKGAMPAFGKNGKLKQDQIDSVTAYVLDQANKGWKK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKQLVGGLLLSAVGIVFAASSLQAAADLAQGEKVFKANCAMCHAGGRNTVNPAKTLKIED
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEECCCCCCCCCCCEEEHHH
LKKYKMDTAAAISAQLYNGKGAMPAFGKNGKLKQDQIDSVTAYVLDQANKGWKK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1967057 [H]