Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
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Accession | NC_005085 |
Length | 4,751,080 |
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The map label for this gene is gpmB [H]
Identifier: 34498666
GI number: 34498666
Start: 3492680
End: 3493321
Strand: Direct
Name: gpmB [H]
Synonym: CV_3211
Alternate gene names: 34498666
Gene position: 3492680-3493321 (Clockwise)
Preceding gene: 34498665
Following gene: 34498667
Centisome position: 73.51
GC content: 66.04
Gene sequence:
>642_bases ATGACTCAGCCCGTTACCCGCTTCTGCCTGGTTCGCCACGGCGAAACCGACTGGAACCGCGAATACCGGCTGCAAGGCCA TACCGACATCCCCCTCAACCACGCCGGACTGGAGCAGGCCAGCCAGCTGGCCCATGCCTTCCGGCCCGACCACGCCTTCC AGGCGCTCTATGTCAGCGACCTGATCCGCACCCGGCAAACCTCGGCGCCGCTGCAAACCCGGCTGCAGTTGAACGCCCAC TACACGCCGCAGCTGCGCGAGCGCCACATGGGCGCGCTGCAGGGCCTCACTTATGCGGAAGCCGCCGAGCAAATTCCCGA CCTCTACCGCCGGCACCAGGCGCGCGATCCCGACTTCGACCTGGAAGGCGGCGAAAGCCTGCGCCGTTTCCGCGCCCGCA TTCTGGACGGTCTCGCCAGCATCGCAGCCCTGCATCCCGGCGAGAACGTGCTGATCGTCACCCACGGCGGCGTGCTGGAC ATCGTCTACCGCGCCGCCACCTCAAAACCATTGGAAGAAAAACGCGACTTCCCCATTCCCAACGCCGCGCTGAACTGGCT GGACTACCAAAACGGCGGCTGGACGCTGCGCCGCTGGGCCGACGAATCCCACCTCAGCAGCGCGCTGGACGAAATCCAGT AA
Upstream 100 bases:
>100_bases TGCTGGACTTCGTCGGCGCCATGACCGACAACTACGCCGCCAATCTGGCGCGCGAACTGTCCGGCGTCGGCATTCTGTAG ATACTCGAAGAAAGGCGACA
Downstream 100 bases:
>100_bases CCCCGCCGCGGCGCGCGTCCGGAACCACGCCTCCACGCGCCGGCGGGAATTTGTTAGTCTCCGGTAAGAAAGCCGCCCGC GCGGCGACCAACCATCAAGC
Product: phosphoglycerate mutase 2
Products: NA
Alternate protein names: PGAM; Phosphoglyceromutase [H]
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MTQPVTRFCLVRHGETDWNREYRLQGHTDIPLNHAGLEQASQLAHAFRPDHAFQALYVSDLIRTRQTSAPLQTRLQLNAH YTPQLRERHMGALQGLTYAEAAEQIPDLYRRHQARDPDFDLEGGESLRRFRARILDGLASIAALHPGENVLIVTHGGVLD IVYRAATSKPLEEKRDFPIPNAALNWLDYQNGGWTLRRWADESHLSSALDEIQ
Sequences:
>Translated_213_residues MTQPVTRFCLVRHGETDWNREYRLQGHTDIPLNHAGLEQASQLAHAFRPDHAFQALYVSDLIRTRQTSAPLQTRLQLNAH YTPQLRERHMGALQGLTYAEAAEQIPDLYRRHQARDPDFDLEGGESLRRFRARILDGLASIAALHPGENVLIVTHGGVLD IVYRAATSKPLEEKRDFPIPNAALNWLDYQNGGWTLRRWADESHLSSALDEIQ >Mature_212_residues TQPVTRFCLVRHGETDWNREYRLQGHTDIPLNHAGLEQASQLAHAFRPDHAFQALYVSDLIRTRQTSAPLQTRLQLNAHY TPQLRERHMGALQGLTYAEAAEQIPDLYRRHQARDPDFDLEGGESLRRFRARILDGLASIAALHPGENVLIVTHGGVLDI VYRAATSKPLEEKRDFPIPNAALNWLDYQNGGWTLRRWADESHLSSALDEIQ
Specific function: Unknown
COG id: COG0406
COG function: function code G; Fructose-2,6-bisphosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. GpmB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790856, Length=210, Percent_Identity=31.9047619047619, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1786970, Length=210, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786857, Length=191, Percent_Identity=25.6544502617801, Blast_Score=63, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324857, Length=210, Percent_Identity=30.4761904761905, Blast_Score=80, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR023086 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 24291; Mature: 24159
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: PS00024 HEMOPEXIN ; PS00175 PG_MUTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQPVTRFCLVRHGETDWNREYRLQGHTDIPLNHAGLEQASQLAHAFRPDHAFQALYVSD CCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH LIRTRQTSAPLQTRLQLNAHYTPQLRERHMGALQGLTYAEAAEQIPDLYRRHQARDPDFD HHHHHHCCCCHHHHEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC LEGGESLRRFRARILDGLASIAALHPGENVLIVTHGGVLDIVYRAATSKPLEEKRDFPIP CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCHHHHCCCCCC NAALNWLDYQNGGWTLRRWADESHLSSALDEIQ HHHHHHEECCCCCEEEEHHCCHHHHHHHHHHCC >Mature Secondary Structure TQPVTRFCLVRHGETDWNREYRLQGHTDIPLNHAGLEQASQLAHAFRPDHAFQALYVSD CCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH LIRTRQTSAPLQTRLQLNAHYTPQLRERHMGALQGLTYAEAAEQIPDLYRRHQARDPDFD HHHHHHCCCCHHHHEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC LEGGESLRRFRARILDGLASIAALHPGENVLIVTHGGVLDIVYRAATSKPLEEKRDFPIP CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCHHHHCCCCCC NAALNWLDYQNGGWTLRRWADESHLSSALDEIQ HHHHHHEECCCCCEEEEHHCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA