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The map label for this gene is bkdR [H]

Identifier: 34498293

GI number: 34498293

Start: 3093469

End: 3093951

Strand: Reverse

Name: bkdR [H]

Synonym: CV_2838

Alternate gene names: 34498293

Gene position: 3093951-3093469 (Counterclockwise)

Preceding gene: 34498295

Following gene: 34498285

Centisome position: 65.12

GC content: 62.53

Gene sequence:

>483_bases
ATGAATCTTTCCAAACTGGGCTTGGATGATGTGGATGTTGCCTTGATGTCCCTGTTGCAGAAGGACGGGAGACTGTCCAA
TGCGAAACTGGCCGAGCAGGTGGCCTTGAGCGAAACGCCGTGCTGGCGCCGGCTGAAGCGGCTGGAGGCCGATGGCTATA
TCGAAGGATATCAGGCGGTGCTCAGCCGCAAGAAGCTGGGCTACGGCGTGCTCGCCTTCGTGCAGGTCGGCTTCGGCAGC
CACATCGGCGACGCGCCGTTGCGTTTCGAGGAACAGGTACAGGCGATCCCGGAGGTATTGTCCTGCCACAACCTGACCGG
CGAATGCGACTACCTGTTGCAGGTGGTCGCCGAGGATCTGGAAGCGTTTGGCGTTTTCGTGCGCGACGTGCTGCGCGAAC
TGCCGGGGGTGTCGTCCATCCGCTCCAGCCTGTCGCTGCGCGAAGTGAAGATGTCGGGCCGGCTGCCGGTGGGGCGCGGA
TGA

Upstream 100 bases:

>100_bases
TGCGGCTAGTGTGCGCCCGGCGGCGTGAAATTGCTTTGCTTTCTCTTGCGTTGTCGAGCTAGATTTGGAAAGACTCTTTC
TGTTTATAGGTTTTTTATAA

Downstream 100 bases:

>100_bases
CGGCTCCGGGCTGAACAGAGGCCCGCGCTTGATCCGACCGCGCGGCCGCGGCGAGCCGGGCGGAAGCTTGCGCATCAGAC
CGCCTGCAGCAGGCCGATCG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MNLSKLGLDDVDVALMSLLQKDGRLSNAKLAEQVALSETPCWRRLKRLEADGYIEGYQAVLSRKKLGYGVLAFVQVGFGS
HIGDAPLRFEEQVQAIPEVLSCHNLTGECDYLLQVVAEDLEAFGVFVRDVLRELPGVSSIRSSLSLREVKMSGRLPVGRG

Sequences:

>Translated_160_residues
MNLSKLGLDDVDVALMSLLQKDGRLSNAKLAEQVALSETPCWRRLKRLEADGYIEGYQAVLSRKKLGYGVLAFVQVGFGS
HIGDAPLRFEEQVQAIPEVLSCHNLTGECDYLLQVVAEDLEAFGVFVRDVLRELPGVSSIRSSLSLREVKMSGRLPVGRG
>Mature_160_residues
MNLSKLGLDDVDVALMSLLQKDGRLSNAKLAEQVALSETPCWRRLKRLEADGYIEGYQAVLSRKKLGYGVLAFVQVGFGS
HIGDAPLRFEEQVQAIPEVLSCHNLTGECDYLLQVVAEDLEAFGVFVRDVLRELPGVSSIRSSLSLREVKMSGRLPVGRG

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=40, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=39.1891891891892, Blast_Score=117, Evalue=3e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17591; Mature: 17591

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSKLGLDDVDVALMSLLQKDGRLSNAKLAEQVALSETPCWRRLKRLEADGYIEGYQAV
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHH
LSRKKLGYGVLAFVQVGFGSHIGDAPLRFEEQVQAIPEVLSCHNLTGECDYLLQVVAEDL
HHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
EAFGVFVRDVLRELPGVSSIRSSLSLREVKMSGRLPVGRG
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNLSKLGLDDVDVALMSLLQKDGRLSNAKLAEQVALSETPCWRRLKRLEADGYIEGYQAV
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHH
LSRKKLGYGVLAFVQVGFGSHIGDAPLRFEEQVQAIPEVLSCHNLTGECDYLLQVVAEDL
HHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
EAFGVFVRDVLRELPGVSSIRSSLSLREVKMSGRLPVGRG
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]