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The map label for this gene is yghA [H]

Identifier: 34498265

GI number: 34498265

Start: 3062459

End: 3063166

Strand: Reverse

Name: yghA [H]

Synonym: CV_2810

Alternate gene names: 34498265

Gene position: 3063166-3062459 (Counterclockwise)

Preceding gene: 34498266

Following gene: 34498264

Centisome position: 64.47

GC content: 70.76

Gene sequence:

>708_bases
ATGAACGCGCCTTCCGATTTTCTGCGGCACAAGACGGTGGCGGTGCTGGGCGGCACCTCCGGCATCGGCAGGGCCGCGGC
CCTGGCCGCGTCGGAAGCCGGCGCCCAAGTCTACGTGCTGGGCCGCTCTGCGGCGCAGCCCGGACCCTGGCAGAGCCTGC
GGGCCGATGTCACCGATCTGTACAGCCTGCGCAACGCCTTCGCCGGCATCGGCCGCATCGACCACCTGGTCCTGACCGCC
GGCGCGCGCGTCGGCTCGCCGCGGCTGGAGGATGCGACGCTGGATGATTTACAGCGGACCTTCGAAGTCAAGTTGTTCGG
CGCCCTGCTGGCGGCGCAGCAGGCCTTGCCCTACCTGGCGCCGGATGCGTCCATCACCTTCACTTCCGGATTGCTGTCGC
GCAAATATGGCCCCGGCGGCCTGCTCAAGAGCGCGGTCAACGCCGCGCTGGAGGCAGCGGCGAAAAATCTGGCCAAGGAG
CTGGCGCCGCGCCGCGTCAACGTGGTCAGCCCCGGCGTGGTGGATACCGAGCTGTGGGGCGAGGCGGGGTCTGAGGGCCG
CGCGGCTGCGATGGCGCGCATCGCGTCCGGCCTGCCGCTGGGCCGGGTGGGCCGGCCGCAAGACCTGGCCCAGGCCTATT
TGTTCGCGATGGGCAACGCCTTCCTCACCGGCGCGGTGCTGGATGTGGACGGCGGCGGCCTGTTGTAG

Upstream 100 bases:

>100_bases
AGGCCTTTGATCTTTACCGGGTGAAGAACGGCCGCATCGCCGAAAACTGGCATCTGGAAGACAACCTGACCTTGCTGAAG
CAATTGGGAGCGCTGAAGCC

Downstream 100 bases:

>100_bases
GCGGAGCATGCGATGAAGAAAACCTTACCGATCAACCGCCGCCAGTTTCTGGCCGGTGCCTCGGCCGGCGGCGCGAGCCT
GGCCCTGGCGCAGGGGCAGG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNAPSDFLRHKTVAVLGGTSGIGRAAALAASEAGAQVYVLGRSAAQPGPWQSLRADVTDLYSLRNAFAGIGRIDHLVLTA
GARVGSPRLEDATLDDLQRTFEVKLFGALLAAQQALPYLAPDASITFTSGLLSRKYGPGGLLKSAVNAALEAAAKNLAKE
LAPRRVNVVSPGVVDTELWGEAGSEGRAAAMARIASGLPLGRVGRPQDLAQAYLFAMGNAFLTGAVLDVDGGGLL

Sequences:

>Translated_235_residues
MNAPSDFLRHKTVAVLGGTSGIGRAAALAASEAGAQVYVLGRSAAQPGPWQSLRADVTDLYSLRNAFAGIGRIDHLVLTA
GARVGSPRLEDATLDDLQRTFEVKLFGALLAAQQALPYLAPDASITFTSGLLSRKYGPGGLLKSAVNAALEAAAKNLAKE
LAPRRVNVVSPGVVDTELWGEAGSEGRAAAMARIASGLPLGRVGRPQDLAQAYLFAMGNAFLTGAVLDVDGGGLL
>Mature_235_residues
MNAPSDFLRHKTVAVLGGTSGIGRAAALAASEAGAQVYVLGRSAAQPGPWQSLRADVTDLYSLRNAFAGIGRIDHLVLTA
GARVGSPRLEDATLDDLQRTFEVKLFGALLAAQQALPYLAPDASITFTSGLLSRKYGPGGLLKSAVNAALEAAAKNLAKE
LAPRRVNVVSPGVVDTELWGEAGSEGRAAAMARIASGLPLGRVGRPQDLAQAYLFAMGNAFLTGAVLDVDGGGLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=238, Percent_Identity=28.9915966386555, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=28.2157676348548, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1789378, Length=255, Percent_Identity=30.1960784313725, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=28.6885245901639, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=30.0411522633745, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787905, Length=254, Percent_Identity=27.9527559055118, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=27.2373540856031, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=27.4131274131274, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=238, Percent_Identity=27.3109243697479, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=256, Percent_Identity=25.390625, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=258, Percent_Identity=26.3565891472868, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=260, Percent_Identity=28.8461538461538, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=255, Percent_Identity=30.1960784313725, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24643142, Length=234, Percent_Identity=31.1965811965812, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI23397609, Length=244, Percent_Identity=32.3770491803279, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=28.8, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=28.9156626506024, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24163; Mature: 24163

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPSDFLRHKTVAVLGGTSGIGRAAALAASEAGAQVYVLGRSAAQPGPWQSLRADVTDL
CCCHHHHHHHHHEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH
YSLRNAFAGIGRIDHLVLTAGARVGSPRLEDATLDDLQRTFEVKLFGALLAAQQALPYLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDASITFTSGLLSRKYGPGGLLKSAVNAALEAAAKNLAKELAPRRVNVVSPGVVDTELWG
CCCCEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHC
EAGSEGRAAAMARIASGLPLGRVGRPQDLAQAYLFAMGNAFLTGAVLDVDGGGLL
CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHEEEEEECCCCCCC
>Mature Secondary Structure
MNAPSDFLRHKTVAVLGGTSGIGRAAALAASEAGAQVYVLGRSAAQPGPWQSLRADVTDL
CCCHHHHHHHHHEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH
YSLRNAFAGIGRIDHLVLTAGARVGSPRLEDATLDDLQRTFEVKLFGALLAAQQALPYLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDASITFTSGLLSRKYGPGGLLKSAVNAALEAAAKNLAKELAPRRVNVVSPGVVDTELWG
CCCCEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHC
EAGSEGRAAAMARIASGLPLGRVGRPQDLAQAYLFAMGNAFLTGAVLDVDGGGLL
CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]