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The map label for this gene is srpC [H]

Identifier: 34498158

GI number: 34498158

Start: 2925262

End: 2926629

Strand: Reverse

Name: srpC [H]

Synonym: CV_2703

Alternate gene names: 34498158

Gene position: 2926629-2925262 (Counterclockwise)

Preceding gene: 34498159

Following gene: 34498157

Centisome position: 61.6

GC content: 63.67

Gene sequence:

>1368_bases
ATGCTCAAGACATGGCCGTGGCTGGCGCTGGCCCTGCTGTTGGCGGGCTGCCAGGCCACGCCGTATCAGCGCCAAGCTTT
GCAGACGCCGGCGCAGTGGACGAAGCAGGGCGAAGCGGATCAGGACATGGGCCGCGAGGCCTGGTGGGGCGGTTTCGGCG
ATCCGGCGCTGCTGGAGGTGCTGCAGCGGGCGCGCAAGCGCAATCCCGACCTGGAAATCGCGCTGCTGAAGCTGCGCAAG
GCACAACTGGAGGCCGGCCTGGCGGATGGCGACGCGCGGCCGACGCTGAGCGGCTCGCTGTCGGGCAATCGCATCCGTTC
GCTGGATGGCGGCGGCTGGTCCCGCAGCCACAGCGAGGGCCTGAAGGTGGCGTATGAGGTGGATTTGTGGGGGCGGGTGG
ATGCCGCTCGCCGCGCGGCGGGGGAAGCTTTCGTCGCCAGCCGCTATGACCAGATCAGCGCGGGTTTGTTGTCCGACAGT
ACCGCCGCCGGTTTGTACTGGGACATCGCCGCCGGTAAGGCCAAACTGATTCTGGGTCAAGCAGCGTTGGTCGATGCAGG
TCGCGCGCAAGCGCTGGCTCGGTCCAAATGGAAAGCGGGCGCTTTGGCTGAGCAAGATGTAACGCAGGCGGATAATGCGG
CATTGGAGCAACGCGCCAATCTATTGAGCCTGCGCGAGCAGTTGCGCAAGAAAGAAAATGCGCTGGCCTTGCTGTTGGAT
GGGCCGCCAGGCGCCGCTCTGCCGGATATTCAGCCGCTGGTTGCGCGTCCTGGAATGCCCAACGTTGCCGCAGGCCAACC
AGGAGAGCTACTGCGGCGGCGGCCAGATTTGCAGGCGGCGGAGGCACGGCTGCGCGGCAAATTGGCGGATGTGGACCAGC
AACGCGCCAATTTCTTCCCGCGTTTTAATCTGGGTGGTGACTTGAGCCGTAGCGCAGCGGTCTCCGGTGAACAACTGGGG
TTTGGGGCTACGCTGACGCTACCTTTTCTCAATTGGCGGCAGTTGAACCTGAAGTTGAAGTCCAGCGAGGTAGAGTATCA
GCTGGCGGAGGTTGAGTTTCGCAAGACGCTTTATATCGCTTATCGGGAAGTGGAGGATGGCCTGTATGAGTGGCGCAGGC
TAGGAGAAAGCGCGGCTTTGCAGGATGAGGCAGTCGTCCTGGCTGGACGGAATGCCACGCTGGCGGAGAGCCGCTATAGG
GGCGGAGAGGCGGACATGCAGTCGTGGCTGGATGCAGAGCGTGGAAAGCGCGAGGCCGAGGGGAAACGGTTGGAGTTGAG
CCTGGAGCGGCTGAAAAATCTGGCGGTTCTGTATAAAGCGCTTGGCGGCGGTGCCGTCGAGGCAGGCGTTGGTGGGGGAT
GGGAGTAA

Upstream 100 bases:

>100_bases
CTGCTCGTCGCTGATCGGCGTGCTGTTCGGCTTCCTGCCGGCGCGCAATGCCGCCAAGTTGAACCCGATAGACGCGCTGG
CCAGGGAGTAGGAAATGGAC

Downstream 100 bases:

>100_bases
CAGTTGCTCTGGGTTGAGGAGCGATCAGGCCATCTTTTGGAGTTTCAGTGATTTATGAGAGAGGGGTGGAGGCCTTGCAC
GTGTTGCTGAGCGTGAGATT

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MLKTWPWLALALLLAGCQATPYQRQALQTPAQWTKQGEADQDMGREAWWGGFGDPALLEVLQRARKRNPDLEIALLKLRK
AQLEAGLADGDARPTLSGSLSGNRIRSLDGGGWSRSHSEGLKVAYEVDLWGRVDAARRAAGEAFVASRYDQISAGLLSDS
TAAGLYWDIAAGKAKLILGQAALVDAGRAQALARSKWKAGALAEQDVTQADNAALEQRANLLSLREQLRKKENALALLLD
GPPGAALPDIQPLVARPGMPNVAAGQPGELLRRRPDLQAAEARLRGKLADVDQQRANFFPRFNLGGDLSRSAAVSGEQLG
FGATLTLPFLNWRQLNLKLKSSEVEYQLAEVEFRKTLYIAYREVEDGLYEWRRLGESAALQDEAVVLAGRNATLAESRYR
GGEADMQSWLDAERGKREAEGKRLELSLERLKNLAVLYKALGGGAVEAGVGGGWE

Sequences:

>Translated_455_residues
MLKTWPWLALALLLAGCQATPYQRQALQTPAQWTKQGEADQDMGREAWWGGFGDPALLEVLQRARKRNPDLEIALLKLRK
AQLEAGLADGDARPTLSGSLSGNRIRSLDGGGWSRSHSEGLKVAYEVDLWGRVDAARRAAGEAFVASRYDQISAGLLSDS
TAAGLYWDIAAGKAKLILGQAALVDAGRAQALARSKWKAGALAEQDVTQADNAALEQRANLLSLREQLRKKENALALLLD
GPPGAALPDIQPLVARPGMPNVAAGQPGELLRRRPDLQAAEARLRGKLADVDQQRANFFPRFNLGGDLSRSAAVSGEQLG
FGATLTLPFLNWRQLNLKLKSSEVEYQLAEVEFRKTLYIAYREVEDGLYEWRRLGESAALQDEAVVLAGRNATLAESRYR
GGEADMQSWLDAERGKREAEGKRLELSLERLKNLAVLYKALGGGAVEAGVGGGWE
>Mature_455_residues
MLKTWPWLALALLLAGCQATPYQRQALQTPAQWTKQGEADQDMGREAWWGGFGDPALLEVLQRARKRNPDLEIALLKLRK
AQLEAGLADGDARPTLSGSLSGNRIRSLDGGGWSRSHSEGLKVAYEVDLWGRVDAARRAAGEAFVASRYDQISAGLLSDS
TAAGLYWDIAAGKAKLILGQAALVDAGRAQALARSKWKAGALAEQDVTQADNAALEQRANLLSLREQLRKKENALALLLD
GPPGAALPDIQPLVARPGMPNVAAGQPGELLRRRPDLQAAEARLRGKLADVDQQRANFFPRFNLGGDLSRSAAVSGEQLG
FGATLTLPFLNWRQLNLKLKSSEVEYQLAEVEFRKTLYIAYREVEDGLYEWRRLGESAALQDEAVVLAGRNATLAESRYR
GGEADMQSWLDAERGKREAEGKRLELSLERLKNLAVLYKALGGGAVEAGVGGGWE

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=459, Percent_Identity=28.322440087146, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI2367348, Length=424, Percent_Identity=25.2358490566038, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 49457; Mature: 49457

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTWPWLALALLLAGCQATPYQRQALQTPAQWTKQGEADQDMGREAWWGGFGDPALLEV
CCCCCHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHCCCCHHHCCCHHCCCCCCCHHHHHH
LQRARKRNPDLEIALLKLRKAQLEAGLADGDARPTLSGSLSGNRIRSLDGGGWSRSHSEG
HHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
LKVAYEVDLWGRVDAARRAAGEAFVASRYDQISAGLLSDSTAAGLYWDIAAGKAKLILGQ
CEEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECH
AALVDAGRAQALARSKWKAGALAEQDVTQADNAALEQRANLLSLREQLRKKENALALLLD
HHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
GPPGAALPDIQPLVARPGMPNVAAGQPGELLRRRPDLQAAEARLRGKLADVDQQRANFFP
CCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHCCC
RFNLGGDLSRSAAVSGEQLGFGATLTLPFLNWRQLNLKLKSSEVEYQLAEVEFRKTLYIA
CCCCCCCCCHHHHCCCCCCCCCEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHH
YREVEDGLYEWRRLGESAALQDEAVVLAGRNATLAESRYRGGEADMQSWLDAERGKREAE
HHHHHHHHHHHHHCCCHHCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHCCHHCC
GKRLELSLERLKNLAVLYKALGGGAVEAGVGGGWE
CCEEEHHHHHHHHHHHHHHHHCCCCEECCCCCCCC
>Mature Secondary Structure
MLKTWPWLALALLLAGCQATPYQRQALQTPAQWTKQGEADQDMGREAWWGGFGDPALLEV
CCCCCHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHCCCCHHHCCCHHCCCCCCCHHHHHH
LQRARKRNPDLEIALLKLRKAQLEAGLADGDARPTLSGSLSGNRIRSLDGGGWSRSHSEG
HHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
LKVAYEVDLWGRVDAARRAAGEAFVASRYDQISAGLLSDSTAAGLYWDIAAGKAKLILGQ
CEEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECH
AALVDAGRAQALARSKWKAGALAEQDVTQADNAALEQRANLLSLREQLRKKENALALLLD
HHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
GPPGAALPDIQPLVARPGMPNVAAGQPGELLRRRPDLQAAEARLRGKLADVDQQRANFFP
CCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHCCC
RFNLGGDLSRSAAVSGEQLGFGATLTLPFLNWRQLNLKLKSSEVEYQLAEVEFRKTLYIA
CCCCCCCCCHHHHCCCCCCCCCEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHH
YREVEDGLYEWRRLGESAALQDEAVVLAGRNATLAESRYRGGEADMQSWLDAERGKREAE
HHHHHHHHHHHHHCCCHHCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHCCHHCC
GKRLELSLERLKNLAVLYKALGGGAVEAGVGGGWE
CCEEEHHHHHHHHHHHHHHHHCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]