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The map label for this gene is invF [H]

Identifier: 34498088

GI number: 34498088

Start: 2841128

End: 2841721

Strand: Reverse

Name: invF [H]

Synonym: CV_2633

Alternate gene names: 34498088

Gene position: 2841721-2841128 (Counterclockwise)

Preceding gene: 34498089

Following gene: 34498087

Centisome position: 59.81

GC content: 65.15

Gene sequence:

>594_bases
CTGTTGCTGCTGGACCGGCTGGACCTGTCGGTATCCAGCGGGCGGCTGCGCTTCCAGCCGTTGAGACTGGAGGCCTTGAC
CAAGCTGCTGGCTTTCATCGACGAATCCCGCGACGCGGAGCAGGCGCCCGCCGACGCGCACTGGGCGATGCTGGCGCTGG
GCGAGGACGAGGCCTGGGCCGACCGGCGCGCCTGCGAGTACTGGTTTCTGCGCCAGGTGCTGCAGCCGACGGAGGCGTTC
TCCGCGCTGCTGTCGCTGTTGCGGCGCAGCGAAAGTTACTGGCTGGTGCGTTTTCTGCTGGCGCAGTCCGTCTGCGGCGA
CAAGCTGCAGCAGCTGGGCGAGCGTTACGGCGTGTCCTATTCCCATTTCCGCCGCTTGTGCCGCAATGCGCTGGGCAATG
CGGCCAAGACCGAGCTGCGAGGCTGGCGCATGGCGCGCTCGCTGCTGGACGTGGTGGAGGGGCGGGACAGCCTGACCCAG
GTGGCGCTCAAGCACGGCTATGCGTCCTCCTCTCATTTTTCAAATGAAATCAAGGATCTGATCGGCGTCTCTCCGCGCGG
TCTGTCCAATATCATCCAGTTGGCTTCCAAATGA

Upstream 100 bases:

>100_bases
CCAGGAAGTCTGGTTGGTGCTGGCGCGGGAAGCGGCCTCCCTGGCCTTGTCCTGGCCGGCGGGCGGCGACACCGTGGACG
TGCCGGCCGGATGGCGGGGC

Downstream 100 bases:

>100_bases
ACAAGCACCTTCTTTGCGCGCTGCTGTCCGGATGCGCGGTCCTGTTGGCCCAGCCCGCGGCGTCCGCGCCGCAGGCGGCC
GAATCCAGCGGCTACGTCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional regulator invF [H]

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MLLLDRLDLSVSSGRLRFQPLRLEALTKLLAFIDESRDAEQAPADAHWAMLALGEDEAWADRRACEYWFLRQVLQPTEAF
SALLSLLRRSESYWLVRFLLAQSVCGDKLQQLGERYGVSYSHFRRLCRNALGNAAKTELRGWRMARSLLDVVEGRDSLTQ
VALKHGYASSSHFSNEIKDLIGVSPRGLSNIIQLASK

Sequences:

>Translated_197_residues
MLLLDRLDLSVSSGRLRFQPLRLEALTKLLAFIDESRDAEQAPADAHWAMLALGEDEAWADRRACEYWFLRQVLQPTEAF
SALLSLLRRSESYWLVRFLLAQSVCGDKLQQLGERYGVSYSHFRRLCRNALGNAAKTELRGWRMARSLLDVVEGRDSLTQ
VALKHGYASSSHFSNEIKDLIGVSPRGLSNIIQLASK
>Mature_197_residues
MLLLDRLDLSVSSGRLRFQPLRLEALTKLLAFIDESRDAEQAPADAHWAMLALGEDEAWADRRACEYWFLRQVLQPTEAF
SALLSLLRRSESYWLVRFLLAQSVCGDKLQQLGERYGVSYSHFRRLCRNALGNAAKTELRGWRMARSLLDVVEGRDSLTQ
VALKHGYASSSHFSNEIKDLIGVSPRGLSNIIQLASK

Specific function: Transcriptional regulator required for the expression of several genes encoding type III secretion system SPI1 effector proteins. The interaction with sicA is necessary for the activation of sigDE (sopB pipC), sicAsipBCDA, and sopE [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22325; Mature: 22325

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLDRLDLSVSSGRLRFQPLRLEALTKLLAFIDESRDAEQAPADAHWAMLALGEDEAWA
CCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHEEECCCHHHH
DRRACEYWFLRQVLQPTEAFSALLSLLRRSESYWLVRFLLAQSVCGDKLQQLGERYGVSY
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SHFRRLCRNALGNAAKTELRGWRMARSLLDVVEGRDSLTQVALKHGYASSSHFSNEIKDL
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHH
IGVSPRGLSNIIQLASK
HCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MLLLDRLDLSVSSGRLRFQPLRLEALTKLLAFIDESRDAEQAPADAHWAMLALGEDEAWA
CCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHEEECCCHHHH
DRRACEYWFLRQVLQPTEAFSALLSLLRRSESYWLVRFLLAQSVCGDKLQQLGERYGVSY
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SHFRRLCRNALGNAAKTELRGWRMARSLLDVVEGRDSLTQVALKHGYASSSHFSNEIKDL
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHH
IGVSPRGLSNIIQLASK
HCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]